Query= MSMg01no457_b14.b1 MSMg01no457_b14.b1 CHROMAT_FILE:
MSMg01no457_b14.b1 PHD_FILE: MSMg01no457_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:10 2005
(504 letters)
>mm_chr2_169130060_169130964
Length = 905
Score = 714 bits (369), Expect = 0.0
Identities = 447/503 (88%), Gaps = 49/503 (9%)
Strand = Plus / Plus
Query: 4 gaattcttttgcttc-c-gctctcttcacttctgattctcaagattacctgctcccttcc 61
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttttgca-cacagctctcttcacttctgattctcaagattacctgctcccttcc 262
Query: 62 tgttcccttcggatcagaggatgttaacagtccctttgaatggtatagtgctttcggcaa 121
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 263 tgttcccttcggatcagaggatgttaacagccccttcgaatggtatagtgctttcggcaa 322
Query: 122 acttcctcagggtgacactgactatacagtgctttgctgtggtcttttgtgggatccctt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acttcctcagggtgacactgactatacagtgctttgctgtggtcttttgtgggatccctt 382
Query: 182 gagaattatgaatgggtgcctagcttctgactgcatcctgctctttagcaaagtgctcgc 241
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 gagaattatgaatgggtgcctagcttctgactgcatcccgctctttagcaaagtgctcgc 442
Query: 242 cttcgctcctctttctaagcttctcagagtctcttttgtttggtactggatccagtgcag 301
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 cttcgctcccctttctaagcttctcagagtcacttttgtttggtactggatccagtgcag 502
Query: 302 cagttctcaacttgattggttgtgactgaccccggatccagtgcagcagttctcaacttg 361
||||||||||||||||||||
Sbjct: 503 cagttctcaacttgattggt---------------------------------------- 522
Query: 362 attggtcgtgactgacccctttgagatcgtaagactctttcacaggggtggcctgacacc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ------cgtgactgacccctttgagatcgtaagactctttcacaggggtggcctgacacc 576
Query: 422 attgaaaacacagatgtttacattgcgatttataacagcagcaagcttacagttatgaag 481
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atggaaaacacagatgtttacattgcgatttataacagcagcaagcttacagttatgaag 636
Query: 482 aagcaacagaaataattttatgg 504
|||||||||||||||||||||||
Sbjct: 637 aagcaacagaaataattttatgg 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_b14.g1 MSMg01no457_b14.g1 CHROMAT_FILE:
MSMg01no457_b14.g1 PHD_FILE: MSMg01no457_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:10 2005
(329 letters)
>mm_chr2_169329790_169330518
Length = 729
Score = 590 bits (305), Expect = e-173
Identities = 324/331 (97%), Gaps = 2/331 (0%)
Strand = Plus / Minus
Query: 1 acttgctttctatttgtaattcattgtccagtgtttgtaagtttgtctccacacccagca 60
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 491 acttgctttcaatttgtaattcattgtccagtgtttgtaagtttgtctctacacccatca 432
Query: 61 agagtgtcattctaacccttgatgaccatgacgccctttcgttgtgttttgggatatcct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agagtgtcattctaacccttggtgaccatgacgccctttcgttgtgttttgggatatcct 372
Query: 121 gaggctctgtagatacacggcagagaaagcaaggccatccccgtgcactggtctggctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaggctctgtagatacacggcagagaaagcaaggccatccccgtgcactggtctggctgg 312
Query: 181 agctccgtggtctcatccttctgatcatctctctctgttcctaggcctgcgaggggacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agctccgtggtctcatccttctgatcatctctctctgttcctaggcctgcgaggggacag 252
Query: 241 aagactctgagtggagctagggaagcaacagctgtgtgaggctcttcatacgtgtgtgtg 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagacactgagtggagctagggaagcaacagctgtgtgaggctcttcatacgtgtgtgtg 192
Query: 301 tgtg--agtgtgtgtgagtgagtgtgtgtga 329
|||| |||||||||||||||||||||||||
Sbjct: 191 tgtgtgagtgtgtgtgagtgagtgtgtgtga 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
