BAC Information

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BAC

Clone NameMSMg01-457F14
Chromosome2 (Build37)
Map Location 130,733,454 - 130,733,872
singlet/doubletsinglet
Overlap geneAtrn
Upstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316
Downstream geneLOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F14.T7 (MSMg01no457_f14.b1)MSMg01-457F14.TJ (MSMg01no457_f14.g1)
ACCAG543437AG543438
length773779
length of high quality
(start - end)
449 (71 - 519)246 (79 - 324)
definitionCHROMAT_FILE: MSMg01no457_f14.b1 PHD_FILE: MSMg01no457_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:31 2005CHROMAT_FILE: MSMg01no457_f14.g1 PHD_FILE: MSMg01no457_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTCCTTCCTTCACGCTTGCAAATCCTACTTAACCTCACATGCTC
AAATTCAATGTCACCTCCTCCTCCTCCTCCGAGACTTCTCTGCTTACTGC
TAGCCAGTCACACACTCTCTGCCCCTTCATTTCCACAGGTTCTCTTATGC
CAGGTTCAGGCCTCACTCAGATCAAATGACACTCAAATGAGTGGCTTCTA
ATGTCACCACTTATCGGAATCCTGGAAGACCGACCACCTGTTTGTAGTTT
GCTTTTAGCATTTATCATTATCTGAAATTATCCTGCTCATTCCTTTTGCC
TAGTTACGTGTTGACTGCCTGTCAGCCCTCACTAGAACATAAGATCAATT
GGAGCAAGAATCAATCCTATGCCACGTTCACATTCCCTCACTTTCCCACG
TCAAATGGGGAACCCAGTCAACAAATATCTGCCTGAGATATGGATGACAC
TGTAGGTCTTATAACTTCCCCTTGCTGTGTTCCTAACTTCTTGTGGACCA
CATCAAACTCTGGATGATGGATCTACCTGTGTGCATTATCCCNAAATTCT
CTCACAACAGAAGCTAATAATATATAAAAGCTAATTAAAAAGTGATCTTC
TCCTAAGAGGTCCTGGCCCAAAACAAAGCCAACTGGCTGGTGGTGGAAAA
AACAAAGGGCATAAAGAAGTCTCCCTCCCTTAAAAAACTCCGGTTTCAAA
TAGTCCTCACGTGAGGGAAACCN
NNNCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAACTTTTGGAAGGGTATA
TGTGATGGTTTGTATATGCTCAGCCCAGGGAATGGCACTATTAGAAGGTG
TGGCCCTGTTAGAGTAGGCACTGTGGGTATGGGCTTTAAGACCCTCATCC
TAGTTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTTAGAACTCTCAGCT
TTTTCTGTCTCCATGCCTGCCTGAATGATGCCATGTTCCTGCTTTGATGA
TAATGGACTGAACCTCTGAATCTATTTTTCTGCCCTAATTAAGTCAGCCC
TAATTAAATATTGTCCTTATAAGAGTTGCCTTGGGCTGGAGAGATGGCTC
AACGGTTAAGAGCACTGACTGCTCTTCCAAAAGTCCTGAGTTCAAACCCA
GCAACAACATGGTGGCTCACAACCATCTGTAATGAGATGATGCCCTCTTC
TGGNGCATCTGGAGACAGGTACAGTGTACTTACATATTATAAATAAATAA
TCCTTAATAAAATAAAGAGTTGCCTTGGCCATGTGTTCTTGTTTGCATCA
TTAACCCCTAAGAACGTGGTTTACATTTCTACCTATATCCTCTTAACCGT
GCTCTTCGTTTCTTTTTTTTTTTTTTTTTTTTTCCATTTCATTCACTTTA
CTCCTCTTTCCTCTCTTTCCTTCCTCTCTTTTCCACTCTCTCCTCTTTTA
TTTACTTTACCTTCTATTGTTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f14.b1 MSMg01no457_f14.b1 CHROMAT_FILE:
MSMg01no457_f14.b1 PHD_FILE: MSMg01no457_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:31 2005
         (449 letters)



>mm_chr2_130733454_130734305
          Length = 852

 Score =  756 bits (391), Expect = 0.0
 Identities = 411/419 (98%), Gaps = 3/419 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgcaaatcctacttaacctcacatgctcaaattcaatgtca---cctcctcctcctcc 57
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 419 cttgcaaatcctacttaacctcacatgctcaaattcaatgtcacctcctcctcctcctcc 360

                                                                       
Query: 58  tccgagacttctctgcttactgctagccagtcacacactctctgccccttcatttccaca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tccgagacttctctgcttactgctagccagtcacacactctctgccccttcatttccaca 300

                                                                       
Query: 118 ggttctcttatgccaggttcaggcctcactcagatcaaatgacactcaaatgagtggctt 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 299 ggttctcttatgccaggttcaggcctcactcagatcaaatgacactcaaatgggtggctt 240

                                                                       
Query: 178 ctaatgtcaccacttatcggaatcctggaagaccgaccacctgtttgtagtttgctttta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 239 ctaatgtcaccacttatcggaatcctggaagaccgaccacctgtttgtattttgctttta 180

                                                                       
Query: 238 gcatttatcattatctgaaattatcctgctcattccttttgcctagttacgtgttgactg 297
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gcatttaccactatctgaaattatcctgctcattccttttgcctagttacgtgttgactg 120

                                                                       
Query: 298 cctgtcagccctcactagaacataagatcaattggagcaagaatcaatcctatgccacgt 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 119 cctgtcagccctcactagaacataagatcaattggagcaagaatcaatcctacgccacgt 60

                                                                      
Query: 358 tcacattccctcactttcccacgtcaaatggggaacccagtcaacaaatatctgcctga 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  tcacattccctcactttcccacgtcaaatggggaacccagtcaacaaatatctgcctga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 852
Length adjustment: 10
Effective length of query: 439
Effective length of database: 842
Effective search space:   369638
Effective search space used:   369638
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)