BAC Information

Click to search

BAC

Clone NameMSMg01-457I16
Chromosome2 (Build37)
Map Location 98,691,539 - 98,692,038
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621146, LOC664974, LOC100042886
Downstream geneLOC621386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457I16.T7 (MSMg01no457_i16.b1)MSMg01-457I16.TJ (MSMg01no457_i16.g1)
ACCAG543584AG543585
length762754
length of high quality
(start - end)		503 (48 - 550)337 (85 - 421)
definitionCHROMAT_FILE: MSMg01no457_i16.b1 PHD_FILE: MSMg01no457_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:47 2005CHROMAT_FILE: MSMg01no457_i16.g1 PHD_FILE: MSMg01no457_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGATCTGTTCCTGATAACAGGATCTCAGATGAATCTTATAAGC
CTCAAGTGAATGGCCTATTCTAATACTCTTATTTAATTATGAGAAGAAAG
CTAGAAAACACAAAAAATAAATATTTCATTTAAATGTATCAGAAACCATT
ATTGTGTCATTTAATAAGTCCATAAATAAAATGATCGGTGTCTGAGTGCA
GTAGTTTGAGTAAGAATGGCCCCCATAGGCTCGCATATTTGAATGCCTAG
TCACCAAGGAGTGAAACTCTTTGATAGTGTCAGGACGGTTAAGGCTTAGC
ATTATTGGAGGAAATGTGGCCTTGGAGGTCAGCTTTTATGTTTTCAGAAG
CCTATGTCAAGCCCAGTCTTTTTTCCTGCTGCTTATTTATCAGAATGTAA
AGCTTTCAGCTCCAGGGCCATGCATGCCTGAGTGCCATCATGTTCCCTAC
CATGATGATGGACTAACACTCTGAAAGTGCAAGCAAAGCCCAGTTAAATG
TTTTGTTGTTATTGTTTCTCTGCTTGTTTTTTGGTTTATACATAAAGGCT
GCTGGGGTCGTGGTGTCTCTTAACAAAATTAAGAGAGGGAAAAAAACTGT
GTTTTATACTGGATTTTACATAAGGGGAAAACTAAAGGTTTGGTGGGATA
GGCCCTTATATTTTCTATTTAACTATTAGGGGAATAAAGTTCCCACGTCT
TGGAAATGGTGG

NTTTTTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGATAAGTGGATAT
TGGCCATAAAATACAGAATACACATGCTATACTCCATACACCCATAGAAG
CTAAACAAGAAGAAAGCCAGGATGCTCAAATCTCCCTTAGAAGGGAGAAT
AATATTGTTCTATGCAGCATATAGAGTGAGGGAACTGTGTGGGAGAAGGG
AGACCAAGGGGAATGGGTGGGGTTCAGGATCAGGAAAAGGAGAAAAGATG
AGATGACCTGGAGAATAAAATGAAATCGGCTACTGGTTGAGTATTGTGAT
ATAGGGGCATCTTGTGGACATGCCAGAGACCTGGGATATGGTACACACCC
AAGAATCAGTGGTTGACCTCATCTGGGACTCAGAACATTAGGAATATGGA
ATCAGAAGAGGCTACCTCCTATGATCAGGAAGGACCTTATTGGAAAAATT
AGGGCTCTATTCTTCGATCTATTATCTTTGTTCTTCATGGCTTGTTTTCC
ATAATTGTTTGGATTGGTGATGGATTTTTTTTATGTTCCCATTTTATGTT
TTTCCCCCCTTTTTTTAACATTTTCCTTTTTTGGCCTTTTTTTATCACTG
CGTTTCCTCCCTGTTTTTCTCTTTTTTTTTTTCCATAAAATTTTCTACTG
TTTTTACCCTCTTTGTTTCTTCGCTCTTCTCCTTACACCTTTTTCCTCTT
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_i16.b1 MSMg01no457_i16.b1 CHROMAT_FILE:
MSMg01no457_i16.b1 PHD_FILE: MSMg01no457_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:47 2005
         (503 letters)



>mm_chr2_98691336_98692238
          Length = 903

 Score =  920 bits (476), Expect = 0.0
 Identities = 494/502 (98%), Gaps = 5/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgatctg---ttcctgataacaggatctcagatgaatcttataagcctcaagtg 61
           |||||||||||||   |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgatctgaaata--tgataacaggatctcagatgaatcttataagcctcaagtg 261

                                                                       
Query: 62  aatggcctattctaatactcttatttaattatgagaagaaagctagaaaacacaaaaaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatggcctattctaatactcttatttaattatgagaagaaagctagaaaacacaaaaaat 321

                                                                       
Query: 122 aaatatttcatttaaatgtatcagaaaccattattgtgtcatttaataagtccataaata 181
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaatatttcatttatatgtatcagaaaccattattgtgtcatttaataagtccataaata 381

                                                                       
Query: 182 aaatgatcggtgtctgagtgcagtagtttgagtaagaatggcccccataggctcgcatat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatgatcggtgtctgagtgcagtagtttgagtaagaatggcccccataggctcgcatat 441

                                                                       
Query: 242 ttgaatgcctagtcaccaaggagtgaaactctttgatagtgtcaggacggttaaggctta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 442 ttgaatgcctagtcaccaaggagtgaaactctttgatagtgtcaggacggttaaggcttg 501

                                                                       
Query: 302 gcattattggaggaaatgtggccttggaggtcagcttttatgttttcagaagcctatgtc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcattattggaggaaatgtggccttggaggtcagcttttatgttttcagaagcctatgtc 561

                                                                       
Query: 362 aagcccagtcttttttcctgctgcttatttatcagaatgtaaagctttcagctccagggc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aagcccagtcttttttcctgctgcttatttatcagaatgtaaagctttcagctccagggc 621

                                                                       
Query: 422 catgcatgcctgagtgccatcatgttccctaccatgatgatggactaacactctgaaagt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catgcatgcctgagtgccatcatgttccctaccatgatgatggactaacactctgaaagt 681

                                 
Query: 482 gcaagcaaagcccagttaaatg 503
           ||||||||||||||||||||||
Sbjct: 682 gcaagcaaagcccagttaaatg 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |