BAC Information

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BAC

Clone NameMSMg01-457K02
Chromosome2 (Build37)
Map Location 59,347,126 - 59,347,297
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik
Downstream geneLOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457K02.T7 (MSMg01no457_k02.b1)MSMg01-457K02.TJ (MSMg01no457_k02.g1)
ACCAG543651AG543652
length782863
length of high quality
(start - end)
189 (128 - 316)180 (73 - 252)
definitionCHROMAT_FILE: MSMg01no457_k02.b1 PHD_FILE: MSMg01no457_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:54 2005CHROMAT_FILE: MSMg01no457_k02.g1 PHD_FILE: MSMg01no457_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGA
GATCCGCGGAATTCAACACCCTCTCTCTCAGACAATGGACAGATCATGGG
AAACAGAAACTTAATCAGAGTCACATGTGAAACTAACAGAAGTTATGAAC
TAAATGGATCTAACAGATGTTTGTAGAACATTTCATCCTAAAGCAACAGA
ATATACCTTCTTCTCAGCACCTCACGGTACCTTCTCCAAAATTCGCCATA
TAATTGATCACAAAATAGGCCTCAAGAGATACAAGAAGATTGAAATTATC
CCATGCATCCTATCAGATTACCACGGACTAAGTTTGCTCTTAAATACCAA
CAGAAACAACAGAAAACACATATATACATGGAAACTGAACACTCTATTTA
ATGATAACTTGGTCTAGGTCGAAATATCTTACCGTCTTTTTATTATTTAA
TGAAAATGACTATATATCATGCCAAATATTCTGGTATACAACGATAGTCT
CTGTTAATATGTTAAATTCTTTATTGCTTCTACTTATTAACCTGATTTGT
GATTCTTCTCTCTCCACATCATCTCTTTTTGTTTTGTTAATTCTTTACTC
CTTTTTTTATCTAATACCTTGTCTTTTCTTCCCTACGTGTCTTGCACTTT
TCACTACTTTTTCCGTCTAAACCATCCCTTCATACACTTTTCCCCCCTAC
TGTTTTCTTTTTTTCCTTTTCCCTCTTATTCACAATTTCTACCACTTCCT
TCCCTATCGTTCCTTCTTTCCTGCTCCTTTAC
NNNNTTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGGAATTCTCAGCTTCCTCCCTCAC
CTTTGTTCTTATGGGATGGAAGAGGCCACTGCAGACTTGAGGCTAAGGCA
TGCCCAGAGAAACTCCCCCACCTAGCCTCAGAGACCACTTAGCCTTCCAG
AGGCTTATTTTTCTCTCAGGCCTTGGCTATTTCTTTGAACATGTTTCTGC
NTNNCTTTTTTCTCTTCATACCTTCTTCATTTTCCCCCTTTGGGCCTTAA
CATTTCCGGGGCCAATTTTCCAGGGGTTTTTCCTAAATTTTAAATTTTAT
TTCCTTCCCCCCTTTGTTTTTTTTTTTTTTTGGTTCATAAAATGTGGNNT
TTTTCCCCCNCTTGCGCCCTCCTTTCTCCCCTCTCTTCTCCTCTTTTCGT
CCGTTTTCCTTTTTTTTTTTTCTTCCGCTTTATCCTTTTTTTATTTTTTT
TCCCCTCTTATTTTTCTTGTTACCTCTTTCCTCCCCCCTCGTTTTTTTTT
TTCTCTTCCTTGCTTCTCTTCTCTCCCTCCGTCTCTTTGTTTTTCTGCTT
TGGCTCTTTATTATTTTCTCTCTTCTTTTATACCTATTTTTATCTTCCAT
TGTCTCTTTTTTCCCCTCTTCTTTGCTCCTTCTCCTATTGCCCTTTCCCT
TTTCCACTCTATTCTCCCCCTCTTTCTTTTGATTCTCTCCCTCTTCTCTC
TCCCGTTTTTTATTCCTTTTCTTTTTTTTCTCTTTTCCCCTTTTTTCTTT
TTGTTTTCCCCCGTCTCTCTTTCTTGCTTTTTTTACCTTCACCCCTTTTT
TGTCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_k02.g1 MSMg01no457_k02.g1 CHROMAT_FILE:
MSMg01no457_k02.g1 PHD_FILE: MSMg01no457_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:54 2005
         (180 letters)



>mm_chr2_59346921_59347499
          Length = 579

 Score =  304 bits (157), Expect = 3e-87
 Identities = 169/173 (97%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcagcttcctccctcacctttgttcttatgggatggaagaggccactgcagact 65
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaattctcagcttcctccctcgcctttgttcttatgggatggaagaggccactgcagact 318

                                                                       
Query: 66  tgaggctaaggcatgcccagagaaactcccccacctagcctcagagaccacttagccttc 125
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 317 tgaggctaaggcatgcccagagaaactcccccacctaacctcagagaccacttagccttc 258

                                                                
Query: 126 cagaggcttatttttctctcaggccttggctatttctttgaacatgtttctgc 178
           |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 257 cagaggcttatttttctctcaggccttggctatttctttgaaaat-tttctgc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 579
Length adjustment: 8
Effective length of query: 172
Effective length of database: 571
Effective search space:    98212
Effective search space used:    98212
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)