Query= MSMg01no457_k16.b1 MSMg01no457_k16.b1 CHROMAT_FILE:
MSMg01no457_k16.b1 PHD_FILE: MSMg01no457_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:58 2005
(432 letters)
>mm_chr2_111207213_111208044
Length = 832
Score = 654 bits (338), Expect = 0.0
Identities = 359/366 (98%)
Strand = Plus / Minus
Query: 67 ttaacatcgtccctccatttatttctcttgaatttttccctcttccttatttctgtactt 126
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 832 ttaacatcatccctccatttatttctcttgaatttttccctcttctttatttctgtactt 773
Query: 127 tttaatattatatttaattttaaaattagaagaccaaaatgtcaccaaattagggaatat 186
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tttaatattatatttaagtttaaaattagaagaccaaaatgtcaccaaattagggaatat 713
Query: 187 tttgcaatttctgtgttaggaattaaaagaactgttacatttaaagaattttaaaactat 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 712 tttgcaatttctgtgttaggaattaaaagaactgttacatttaaagaattttaaaaatat 653
Query: 247 tatattttattaataatattgcatatttatttcctgggtcgatctcaataaagtagtaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tatattttattaataatattgcatatttatttcctgggtcgatctcaataaagtagtaaa 593
Query: 307 actgtagtgcaaaataaggtaattctaacttcaagtccccaatattacttccagactatg 366
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 592 actgtagtgcaaaataaggtaattctaaattcaagtccccaatattacttccagactatg 533
Query: 367 aaataaatgatatgataggaatcatgattttcagtagtccaagaaaattagtgaaattta 426
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 532 aaataaatgatatgataggaatcatgattttcagtagtccaagaaaattaatgaaatttg 473
Query: 427 taaaac 432
||||||
Sbjct: 472 taaaac 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no457_k16.g1 MSMg01no457_k16.g1 CHROMAT_FILE:
MSMg01no457_k16.g1 PHD_FILE: MSMg01no457_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:58 2005
(380 letters)
>mm_chr1_6238986_6239765
Length = 780
Score = 567 bits (293), Expect = e-166
Identities = 357/389 (91%), Gaps = 22/389 (5%)
Strand = Plus / Plus
Query: 8 ttaaacatgaaaaggatgctattgtctgtgtgcagcaagaaaaggatcagaagttgttag 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttaaacatgaaaaggatgctattgtctgtgtgcagcaagaaaaggatcagaagttgttag 257
Query: 68 aaatggaaaatataaggcatactcaaaattgtgaaattaaagaactgaagcagtcatgag 127
| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 258 agatggaaaagataatgcatactcaacattgtgaaattaaagaactgaagcagtcacgag 317
Query: 128 agatggtgttagaagacctgaaaaagctgcatgatgaaaaaatagagtcattgagagctg 187
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 318 agatggcattagaagacctgaaaaagctgcatgatgaaaaaatcgagtcattgagagctg 377
Query: 188 aatttcagtgcttagaacaaaatcacctgaaggaattagaggacacactgcacatcaggc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatttcagtgcttagaacaaaatcacctgaaggaattagaggacacactgcacatcaggc 437
Query: 248 ac---------ttttttt-----agtt-tgacagaccacaatgtgtctttggagaaatta 292
|| ||| |||| |||||||||||||| |||||||||||||||||
Sbjct: 438 acacacaggagttt----gagaaagttatgacagaccacaatatgtctttggagaaatta 493
Query: 293 aaaaaaaagaaaatcagcaaagaattgaccaggtgctagaatctcatgcctcaactattc 352
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 494 aaaaaa--gaaaatcagcaaagaattgaccagatgctagaatctcatgcctcaactattc 551
Query: 353 ag-aaaaagagcaacagctgcaggagttg 380
|| ||||||||||||||||||||||||||
Sbjct: 552 aggaaaaagagcaacagctgcaggagttg 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
