BAC Information

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BAC

Clone NameMSMg01-457L08
Chromosome2 (Build37)
Map Location 133,120,462 - 133,297,051
singlet/doubletdoublet
Overlap geneA430048G15Rik
Upstream geneCds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
Downstream geneBmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L08.T7 (MSMg01no457_l08.b1)MSMg01-457L08.TJ (MSMg01no457_l08.g1)
ACCAG543710AG543711
length786791
length of high quality
(start - end)
246 (78 - 323)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no457_l08.b1 PHD_FILE: MSMg01no457_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:01 2005CHROMAT_FILE: MSMg01no457_l08.g1 PHD_FILE: MSMg01no457_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,120,462 - 133,120,706)(133,296,806 - 133,297,051)
sequence
GTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATAACTCTTCCTGTTAAGAATGCTGTGTATCGATTGGATTCT
GCCTTTAAACCTTCCTACTACCCAGAGGAAGCCCCTTGCCATTCACACGC
TATTTTCCAACTTCCTCCAACTGCTCTGTTTATTAACCTCAGTCCTAGGT
GGCCATAATCAACTACTTGACTGTATATATTTGCCTATTCTGGACATTTA
ATATATATGGAATTATGCATTATTTGATCTTTTTGTGGCTGGGTTTTCTC
ACTGAACACACTGTTTTTTTATTTTTTCTCTAACTTTTATTTTCATTCTT
CATTTCCTTGATTTAGAAGGAAAAAAGCCTAGGTAGAAGAACACGTGGCA
TTGTTAGGAAATCACAAACGACCCTCCAAGCTTGGGCTGCACCAAAATTT
TATTTATAAATTCAGAAATGAGCACGACCCTTTTGTTTCCCTTCATGCAG
ACTTGAATGATGTCTTTATTGCTTGTTGGTTGGCTTGTGCGATTTTACTG
TTTTGTTGTTTTTTATGTTTCTATGGTTCTGATTTCCTCCCCTTTTTTTT
TCTTCTCCCTTCTTTTTCCTTTTGACAGACTTTTTTTTTCATCACTTCGC
TTTTTTATTATTTTTTTTTTTTAACCAGTCTCCTATTAATTCTTCCTTTT
TTCCGTTTGTTTCTATCTCCTCACTTTCTCTCTCTTATTATTTTTCCTTC
CAATTTCAGTATTCATCCACCTCTTCTTTTTATGCA
TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGAGGCCATGGGGAGTGGTA
GGGAGCTGGGCACTTTCTTTTTTGGTCTTCATGGTGTTAAAAAGATGTTT
AAAAGGGACTTGATTGTAATTTGAAGGTGAACCATATGGAGTCTGCAAGG
CAGAGGCAGTAACCACAGTGTTGAACGTCAAAACTGTGAAAAGTAGAAGT
TGTTGTTTTATACTCTATTTTCTATAACTGCCTGGGTTCAAATCTTGTCA
CTGGCATCCACTAGTGATATGATATTTTTTTTTTAAGTTTGAGTTTTGTC
ATCTGTACTAATGTTTCACACCTGCCCTATGCCTTACAGCATCTGGCTGG
AGATTATTCTAGTTTTCCCCCCCCCCGATGTCTGGCATAGCATATTATTT
CTTTCGCTGCTATTTTCTAACTTTTAAATTGGCTATCATATGTTTTCTTT
GGTGTCTCTTGCTTTTTCTGTGTATTTTTATCACCCTCTTTTTGTTCCAT
TGCTCTTATTTTTTTTTTTTTTTTTTTACTTTCTCTGTATTTTTGCTTTT
TTTTCTCCCTTCTTTTTCCCCTGCTTTTTTTTTATTCTCTTTATTTTTTA
TTCTTCCGCCTTCGTTTTATTTCTTATTTTTTCTTTTTTTTTCTCTTCTT
CCCCTTCTTTTATCTTTTCTCTTTTCTTTTCTTCTTTTATTTCATCTTTT
TACCCTCTTTTTTTTTTTTTCCCTCTCCCGTTATTTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l08.b1 MSMg01no457_l08.b1 CHROMAT_FILE:
MSMg01no457_l08.b1 PHD_FILE: MSMg01no457_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:01 2005
         (246 letters)



>mm_chr2_133120262_133120907
          Length = 646

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgtgtatcgattggattctgcctttaaaccttcctactacccagaggaagcccctt 60
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgtatatcaattggattctgcctttaaaccttcctactacccagaggaagcccctt 260

                                                                       
Query: 61  gccattcacacgctattttccaacttcctccaactgctctgtttattaacctcagtccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccattcacacgctattttccaacttcctccaactgctctgtttattaacctcagtccta 320

                                                                       
Query: 121 ggtggccataatcaactacttgactgtatatatttgcctattctggacatttaatatata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ggtggccataatcaactacttgactgtatatatttgcctattctggacatttaatataaa 380

                                                                       
Query: 181 tggaattatgcattatttgatctttttgtggctgggttttctcactgaacacactgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaattatgcattatttgatctttttgtggctgggttttctcactgaacacactgtttt 440

                
Query: 241 tttat 245
           |||||
Sbjct: 441 tttat 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no457_l08.g1 MSMg01no457_l08.g1 CHROMAT_FILE:
MSMg01no457_l08.g1 PHD_FILE: MSMg01no457_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:01 2005
         (246 letters)



>mm_chr2_133296653_133297298
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgaggccatggggagtggtagggagctgggcactttcttttttggtcttcatggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aactgaggccatggggagtggtagggagctgggcactttcttttttggtcttcatggtgt 340

                                                                       
Query: 61  taaaaagatgtttaaaagggacttgattgtaatttgaaggtgaaccatatggagtctgca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taaagagatgtttaaaagggacttgattgtaatttgaaggtgaaccatatggagtctgca 280

                                                                       
Query: 121 aggcagaggcagtaaccacagtgttgaacgtcaaaactgtgaaaagtagaagttgttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 279 aggcagaggcagtaaccacagtgttgaacgtcaaaactgtgaaaagtagaacttgttgtt 220

                                                                       
Query: 181 ttatactctattttctataactgcctgggttcaaatcttgtcactggcatccactagtga 240
           | | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 taagactctattatctataactgcctgggttcaaatcttgtcactggcatccactagtga 160

                 
Query: 241 tatgat 246
           ||||||
Sbjct: 159 tatgat 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)