BAC Information

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BAC

Clone NameMSMg01-457O17
Chromosome2 (Build37)
Map Location 135,456,228 - 135,456,431
singlet/doubletsinglet
Overlap genenone
Upstream geneTxndc13, LOC627897, LOC433478, Plcb1
Downstream geneLOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457O17.T7 (MSMg01no457_o17.b1)MSMg01-457O17.TJ (MSMg01no457_o17.g1)
ACCAG543872AG543873
length762734
length of high quality
(start - end)
169 (253 - 421)209 (332 - 540)
definitionCHROMAT_FILE: MSMg01no457_o17.b1 PHD_FILE: MSMg01no457_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:19 2005CHROMAT_FILE: MSMg01no457_o17.g1 PHD_FILE: MSMg01no457_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTTTGTTCTCTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCTTCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTG
ATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATTACAACCAGTTGTGCCAGCACCATTTGTTGACAA
TGCTGTCTTTCTTCCTCTGGATGGCTTTAGCTCCCTTGTCTAACATCATG
TGACCATAGGCGCGTTGGTTTCTTTTTTGGTTCTTCAATTTTTTTCCTTT
GTTCTACTTTTTCTGTCTCTATTTCAGGTCCCCGTTACGTTCTTATTATT
CTCTGCCCCTGTTTCCTTTCCCTTTTACTTTTTTTTTGTGTTATTTCTTT
TCTTAGTGTTTTTCTTTTTCTTTATTGTCCCTCTTTTTTATTTCTACCTC
TTCTTTTTGTTN
NNNCCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAAATTCTTATGAGACTTGGAGGAATAGTAT
GTACAGATTTTATTCAAATATGTTTCTTTCTATTTTTGTTGTCATTTATC
TGTACTATAAATGTATGTGTTTTAAAACTTAAAGCAATGCATACACACAC
ACACACAAAGAGCAAGAAAGCTCTATCTGCTTTGTAGTGAGAAAGCAAAC
CTATCTTCCCCTTCTCATCTCACTCTAGCAGAGATGCAGTATTCCGAGGA
CTTACTGATAGGATATGCCTGTTTATTTGTAGCATTTGACCAGGACTGTC
TAGTTCAGGACCCAAGTAATTTAGAGTTATCCTGAAAGATAAATGGATGC
AAGACCCAAAGCAAAGTGGTCAGGATTTATTCAGTACAGAGGCACTTGTT
TTCTGGGTTAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
TTTTCTCTCTCTTCCTCTTTTNGTTTTTTTTTTTCTTTTTTCCCCTTTTC
TTCTTCTTCTTTTCTTCTCTTTTTCTCTTCCCCTCTTTTTTCTTTTCCCC
CTTTTTTTTTTTTTTTTTTTCCCTTTTTCTCCTTCCTTTCCTCTTTTCTT
CTTNCTTTCCTTTTTTCCTTTTCTCTCCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_o17.g1 MSMg01no457_o17.g1 CHROMAT_FILE:
MSMg01no457_o17.g1 PHD_FILE: MSMg01no457_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:19 2005
         (209 letters)



>mm_chr2_135456101_135456709
          Length = 609

 Score =  348 bits (180), Expect = e-100
 Identities = 198/204 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatttgaccaggactgtctagttcaggacccaagtaatttagagttatcctgaaagata 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcatttgaccaggactgtctagtccaggacccaagtaatttagagttatcctgaaagata 272

                                                                       
Query: 61  aatggatgcaagacccaaagcaaagtggtcaggatttattcagtacagaggcacttgttt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 271 aatggatgcaagacccaaagcaaagtggtcaggatatattcagtacagaggcacttgttc 212

                                                                       
Query: 121 tctgggttaggctctctctctctctctctctctctctctctctctctctctctctctctc 180
           |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 211 tctgtgttaggctctctctctctctttctctttctctctctctctctctctctctctctc 152

                                   
Query: 181 tctctctctctctctctctctctc 204
           ||||||||||||||||||||||||
Sbjct: 151 tctctctctctctctctctctctc 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)