BAC Information

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BAC

Clone NameMSMg01-457P11
Chromosome2 (Build37)
Map Location 9,321,616 - 9,321,824
singlet/doubletsinglet
Overlap geneLOC100040710
Upstream genenone
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457P11.T7 (MSMg01no457_p11.b1)MSMg01-457P11.TJ (MSMg01no457_p11.g1)
ACCAG543906AG543907
length749812
length of high quality
(start - end)
214 (324 - 537)49 (83 - 131)
definitionCHROMAT_FILE: MSMg01no457_p11.b1 PHD_FILE: MSMg01no457_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:24 2005CHROMAT_FILE: MSMg01no457_p11.g1 PHD_FILE: MSMg01no457_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGAGTTGCANAAAAACTGTGTTAAGAGCATATTTAATTTAGA
GTGCAAAGATGAACAACTTAGCACAACTGTGTAGCCAGACTGTCTGACTT
AGAATCTTGATGTACTACAATGTTGTGTGATTTTTGACAAATGACTACAT
CTCTATTTCTTCACAGGCTGATGCATGGTATTTAGGTACTATTACATATT
TTTTTAAGATCACTCTTGCTTTATGACAAAATAGTCTGTTTCTGGGCTTC
ACAGAATATAAACGTTAATANTTGATACTGACATCAATCTCTAGTATTCA
TTGATTTATGACTATTTGCAAGATATCGATAGATATTTATAAGAAATTGT
TTGCTATTTGTCTAGACAACTCTATTACACAGGTGTTATTACTGCACAAA
CAAGAAATTGAGATCCAGAAAAAGTCCATTAGCAGTCAACAATCTTGTCA
AAATTTACTGGTAGGTCTAATTTTTAAAAAATGTTTTATTAGATATTTTC
TACATTTACGTTTCAAATGCTATCCCGAAAGTCCCCTATACCCTCCCCCT
GCCCTGCTCCCCTAACCAACCCATTCCAACTTCTTGGTCTTGTTTTTTTC
TCTGAACTGAGGCATATAAAGTTTGCCAGACCCAAGGGCCTCTCTTTCCA
TGGGATGTTGACTAAGGCCCTCCTTGGGTACTTATGGTGCTTAAATAAT
TTGTCTCGAAGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAAAATTCCACAGTCAACATCCACAA
CAAATTGTGTGTGTGTGTGTGTGTGTGTGCCCGTGTGTGTGTGTGTGTGT
GTNTCNNNNCCNCNNTTTTTTTTTCTTTTTTCGCTCCTTTCCTTCTCCCC
CCCTCTTTTCTTTCCTCTTCCTCCTTCCCNCTCCCCCCTCCCTCCCCTCC
TCCTCCTTTTTTTTTTTTTTTCTCGCCCCCCCCGATCCACCCGTTCTTCT
TTCTTCCTCTTTCNCCCGCCGCCCCCACAATATAATCCCTTTAAAAAAAA
AAAACACAACAAAAAAAAAAAATTTTTTTACACCCCCCCAACAAATTACA
CTACAATACATCCCCTAAATCTTTTTACAATAAACAACCAAACAAAAAAA
CAATAATAAATATATACTTAATGACTACATATCACCTACTAAAAACAACC
CAAAAAAATATATAAACCAAATACAACAACACAATATTATAACACTTATT
AATAATAACCAACACAAAAAACCTACAATAAAACTCAAAAATACAACCAC
AAAACATATACATCAAACAAAAATATATAAAAAACAAAAAACAAAACAAA
ACATAATACCAATAAAAAATATAATAATAATAAAATAATAACCATTTAAA
AATAAAAAACAAAAACTATATTTATTTTTTTTTTTATACATCCAATATTA
AACAAACATAATCTCACTTAATACAATAATAAAAAAAATACTTAAATATA
AAATATAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_p11.b1 MSMg01no457_p11.b1 CHROMAT_FILE:
MSMg01no457_p11.b1 PHD_FILE: MSMg01no457_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:24 2005
         (214 letters)



>mm_chr2_9321415_9322024
          Length = 610

 Score =  356 bits (184), Expect = e-103
 Identities = 205/214 (95%), Gaps = 5/214 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatactgacatcaatctctagtattcattgatttatgactatttgcaagatatcgataga 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gatattgacatcaatctctagtattcattgatttatgactatttgcaagatatcgataga 351

                                                                       
Query: 61  tatttataagaaattgtttgctatttgtctagacaactctattacacaggtgttattact 120
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatttataagaaa----ttgctatttgtctagacaactctattacacaggtgttattact 295

                                                                       
Query: 121 gcacaaacaagaaattgagatccagaaaaagtccattagcagtcaacaatcttgtcaaaa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 294 gcacaaacaagaaattgagatccagaaaacgtccattagcagtcaacaatcttgtcaaaa 235

                                             
Query: 181 tttactggtaggtctaatttttaaaaaatgtttt 214
           ||||| ||||||||||||||| ||||||| ||||
Sbjct: 234 tttaccggtaggtctaattttaaaaaaat-tttt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 610
Length adjustment: 9
Effective length of query: 205
Effective length of database: 601
Effective search space:   123205
Effective search space used:   123205
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)