Query= MSMg01no458_d05.b1 MSMg01no458_d05.b1 CHROMAT_FILE:
MSMg01no458_d05.b1 PHD_FILE: MSMg01no458_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:43 2005
(383 letters)
>mm_chr2_132277066_132277850
Length = 785
Score = 710 bits (367), Expect = 0.0
Identities = 380/385 (98%), Gaps = 2/385 (0%)
Strand = Plus / Minus
Query: 1 cacctgggaggcacagtcccaggagaggaagtgagcccaaacagcattttcacacagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cacctgggaggcacagtcccaggagaggaagtgagcccaaacagcattttcacacagccc 526
Query: 61 aagaaggggtatttggatcaatcatagtcatttgttttgagctaaagacagtcttgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aagaaggggtatttggatcaatcatagtcatttgttttgagctaaagacagtcttgcctc 466
Query: 121 tttggtgttacccagtctcttgctagactaccaggggaaataatgtccccttctggtcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttggtgttacccagtctcttgctagactaccaggggaaataatgtccccttctggtcta 406
Query: 181 actggaaatgactgcaagacgacctggagttcagggaatctggtgatagcaaac--aaaa 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 405 actggaaatgactgcaagacgacctggagttcagggaatctggtgatagcaaacaaaaaa 346
Query: 239 aaaacaaacaaacaaaactgactcagtgtctcaaatagccttggttgatgttgggccctc 298
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaaacaaacaaacaaaacagacacagtgtctcaaatagccttggttgatgttgggccctc 286
Query: 299 aggagttagaacaatcagccgagactgtggtacagtttcctcaaggcatctgtggagtgt 358
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 285 aggagttagaacaatcagccgagactttggtacagtttcctcaaggcatctgtggagtgt 226
Query: 359 ttcagatggctggcgctggtttacc 383
|||||||||||||||||||||||||
Sbjct: 225 ttcagatggctggcgctggtttacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 785
Length adjustment: 9
Effective length of query: 374
Effective length of database: 776
Effective search space: 290224
Effective search space used: 290224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_d05.g1 MSMg01no458_d05.g1 CHROMAT_FILE:
MSMg01no458_d05.g1 PHD_FILE: MSMg01no458_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:43 2005
(531 letters)
>mm_chr2_132254676_132255604
Length = 929
Score = 961 bits (497), Expect = 0.0
Identities = 522/531 (98%), Gaps = 2/531 (0%)
Strand = Plus / Plus
Query: 1 taaaatttctttagaggcttaaaaaaatattgatgcccagaaattgtgattaataaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaatttctttagaggcttaaaaaaatattgatgcccagaaattgtgattaataaaaat 260
Query: 61 agcatgcgtcttggacacctgggattaaaaaaaaaatcttcccaatgcacagccatggtt 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 261 agcatgcgtcttggacacctgggatt--aaaaaaaatcttcccaatgcacagccacagtt 318
Query: 121 gaggattcacgctttagctatcttcctctccacggtgagtcactgcacaagtctataccc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 319 gaggattcacgctttagctatcttcctctccacggtgagccactgcacaagtctataccc 378
Query: 181 agcatgcactctgaggagcagaaagcatgtaacttattgctttatcctgctactcagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agcatgcactctgaggagcagaaagcatgtaacttattgctttatcctgctactcagcat 438
Query: 241 cttctgttgcctgcccaggaggcaaaacgcaacagtaaacaaagaatacaaacaatagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttctgttgcctgcccaggaggcaaaacgcaacagtaaacaaagaatacaaacaatagga 498
Query: 301 ggatttgagccactcccactagacttcttgtttagattcctctttcaaaaacggtggtgg 360
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 gaatttgagccactcccactagacttcttgtttagattcctctttcaaaatcggtggtgg 558
Query: 361 aggcctgacactattactgatgctgtggtgtgcttgcagacaggagcctagcatggctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggcctgacactattactgatgctgtggtgtgcttgcagacaggagcctagcatggctgc 618
Query: 421 cctccgaaaggcccagcaagcaactgaaagagtgagatgcagatacttacaccctaccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cctccgaaaggcccagcaagcaactgaaagagtgagatgcagatacttacaccctaccaa 678
Query: 481 tggacaaaagctggggaccgctatggttgaatcagggaaaagctggaagaa 531
|||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 679 tggacagaagctggggacccctatggttgaatcagggaaaagctggaagaa 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 929
Length adjustment: 10
Effective length of query: 521
Effective length of database: 919
Effective search space: 478799
Effective search space used: 478799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
