BAC Information

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BAC

Clone NameMSMg01-458E09
Chromosome2 (Build37)
Map Location 83,537,945 - 83,671,387
singlet/doubletdoublet
Overlap geneItgav, Dnmt3l-ps1, D430039N05Rik
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15
Downstream geneZswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458E09.T7 (MSMg01no458_e09.b1)MSMg01-458E09.TJ (MSMg01no458_e09.g1)
ACCAG544142AG544143
length743748
length of high quality
(start - end)
234 (335 - 568)300 (325 - 624)
definitionCHROMAT_FILE: MSMg01no458_e09.b1 PHD_FILE: MSMg01no458_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:49 2005CHROMAT_FILE: MSMg01no458_e09.g1 PHD_FILE: MSMg01no458_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,537,945 - 83,538,178)(83,671,088 - 83,671,387)
sequence
NGGGATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACGA
GCNGCGGAATTCAGAAACTCCCCTGACTCTGCCTCTGCCTCTGCCTCCCA
AGTGCTGGAATTAAAAACGTGTGTCATCACGGCCCAGCCTCAGATTTTTT
TTTAAATTTAATTTATTTTTTTACTTATTCAATTTACTTACTACAGAAAT
GTCAGCTTTACTACTTACTGATAGAGAGAGAAAAAAAAAAACCAGGTTGG
GAAATATGACCATATGGCATTATCTTTACCTCTGAAGTAGATTTATTATC
CACCTGTCACAGATGAGCTAGACATGTCNGATGNCTTTCCTAGAGGCCAT
ACCTGAGCGTGCAGAGTAGATTAGATTGAAGATGGTATCCAGTTATCACC
GTGACACAGTCACTGAGCACAACACATCAGTCAAAGGAGTCACTCCTCTT
CCAGGGAGAGAGGTGAGATGCAGCAGAGAGAGAAGTCTGTCACTGAGCTT
CTATCAAGCTGAAGTCCTTCTTCATGGAGGTCAGAAAACTGGCTTAAGAC
TATAGTGAGGATGCCTGTCATGTTAGCACATTCCTTTAGTCCCAGCACTT
GACCGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCAGGCTGATCGCTGTA
AGCACGAGACCAGCCTGTTCTATTTGGGGATTCCCAGGACATGCCGGGGT
TCCTGAGAGAAAACCTTGTCCTTTAAAAAAGGAAGGGAGAAAA
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTAAACTCTGTTCCTCAACTGGCAAG
AAACTGCTTAACTGACTGTGTGGGGTCAGCACTGCGCTGCATATCAGCAA
ATAAGCAAGTCTGGAGTCTTCCATGATTTTCAGGTATGAAATGGTGGCCT
CTTCATTTACCAGAAATCATCCTGCTTCAGGTCTCAACAGCTACTGCACC
TGGCATTCCTTCATTAATACATGATTTTACTAGCATTCTCTAGAGATGGG
CCTTGCATCCTTTAGGTTATTTGTTATATGATATGAAATCGTTTGCCTCA
CAGATCATGTTCATGTTGAAGGCTTCCAAAGCAATAATTACTTCATAAAT
AATTTACAAGAATAGAACTATATCTAAATAAAAAGCGATGACGTACCAGG
TAGAAATCACTAAGTTCTGAAGAATTAAAAGGATGCTTCTTGACTTTCCA
GTGTTTCTCGAGGCTCAAGGGGCTATCCAAGATACAGCACACAAAGGATG
AAAGATGCTTAAAAGTGTAAGGCATTTCACCTATTTCTACACCATGACCT
ACACAAAATAAATTCTGGATTGGCTAAAACTTACCACGTATGAACAGAAA
ACTTTGTAATATTATATACAGGTTTGATGGGGTTTTTTTGAGGGGAGGAC
ATTGCTACATTGAACTACCGCATCAATTACTACCTTTGCATCCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_e09.b1 MSMg01no458_e09.b1 CHROMAT_FILE:
MSMg01no458_e09.b1 PHD_FILE: MSMg01no458_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:49 2005
         (234 letters)



>mm_chr2_83537745_83538378
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcctagaggccatacctgagcgtgcagagtagattagattgaagatggtatccagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcctagaggccatacctgagcgtgcagagtagattagattgaagatggtatccagtt 260

                                                                       
Query: 61  atcaccgtgacacagtcactgagcacaacacatcagtcaaaggagtcactcctcttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaccgtgacacagtcactgagcacaacacatcagtcaaaggagtcactcctcttccag 320

                                                                       
Query: 121 ggagagaggtgagatgcagcagagagagaagtctgtcactgagcttctatcaagctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagagaggtgagatgcagcagagagagaagtctgtcactgagcttctatcaagctgaag 380

                                                                 
Query: 181 tccttcttcatggaggtcagaaaactggcttaagactatagtgaggatgcctgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttcttcatggaggtcagaaaactggcttaagactatagtgaggatgcctgt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no458_e09.g1 MSMg01no458_e09.g1 CHROMAT_FILE:
MSMg01no458_e09.g1 PHD_FILE: MSMg01no458_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:49 2005
         (300 letters)



>mm_chr2_83670888_83671587
          Length = 700

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatgatatgaaatcgtttgcctcacagatcatgttcatgttgaaggcttccaaagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatatgatatgaaatcgtttgcctcacagatcatgttcatgttgaaggcttccaaagcaa 441

                                                                       
Query: 61  taattacttcataaataatttacaagaatagaactatatctaaataaaaagcgatgacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taattacttcataaataatttacaagaatagaactatatctaaataaaaagcgatgacgt 381

                                                                       
Query: 121 accaggtagaaatcactaagttctgaagaattaaaaggatgcttcttgactttccagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 accaggtagaaatcactaagttctgaagaattaaaaggatgcttcttgattttccagtgt 321

                                                                       
Query: 181 ttctcgaggctcaaggggctatccaagatacagcacacaaaggatgaaagatgcttaaaa 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 320 ttctcgaggctcaaggggctatccaagatacagcatacaaaggatgaaagatgcttaaaa 261

                                                                       
Query: 241 gtgtaaggcatttcacctatttctacaccatgacctacacaaaataaattctggattggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtaaggcatttcacctatttctacaccatgacctacacaaaataaattctggattggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)