BAC Information

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BAC

Clone NameMSMg01-458G24
Chromosome2 (Build37)
Map Location 154,222,567 - 154,454,602
singlet/doubletdoublet
Overlap geneSnta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341
Upstream geneAsxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1
Downstream geneChmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458G24.T7 (MSMg01no458_g24.b1)MSMg01-458G24.TJ (MSMg01no458_g24.g1)
ACCAG544268AG544269
length806773
length of high quality
(start - end)		166 (56 - 221)491 (72 - 562)
definitionCHROMAT_FILE: MSMg01no458_g24.b1 PHD_FILE: MSMg01no458_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:02 2005CHROMAT_FILE: MSMg01no458_g24.g1 PHD_FILE: MSMg01no458_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,222,567 - 154,222,731)(154,454,125 - 154,454,602)
sequence
CTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGA
ACCGCGGAATTCACCTCTATTTGCTTATGGACTGCAGATGCACTGTGACC
TGTGACCTGTGAACTTCAACACTTGCTGCCAGGACTTCAGTGCCACGATG
GATTGTACAGATCCTTCCTTTAATTGTTTGTTTGTTTGTTTGTTTGGGGG
TATGGGGCATGGTTTTGGTTTGCCTCTCTCTTGCTTTCTGTCTGTCGCGT
TCTCCTCCTTTTCTGTGTAGTTTTGTTTGTGCGTCGCGTTTCTTCCGCCG
GCGCGGCTCCGTGCCGCCCTCGTTTTTTTTTTTTTCTTTGCGCTGATTTC
TTCTTTTTATTTTCTTTTTTCCCCCTCTCCTCACTTGGAGCTTTCCTTTC
TTATCATCCTGTTTTCTTTCCCCCCCCCCATAAAATTATTACTAAATTCT
CCCTTACTTTTCATATCTTCTACTATACATCTTATATTTTTAATATCACC
TTCTATATAAACCTCTCTCTTACATCATTCCTATTTATTTTTTTCTACTT
TTTCTTTCTCTCTCGTATTATTTTTACATCAATAACTTAATACAATCTTA
TCCAATTTAATCATTATTTATTACTATTTATAATTCCCTTTCTTTATATT
CTACTCATTTTCTCTCCTTTTAATCATTCTCTTTTATTTCTATCTCCTTT
CTTTCATGTATTTTTTTTCTCTTCTATATTTTCTCTAACATACTTATTAA
TCGCTATTCTAAATTTCTCCCACTTTCCTTCCTTTATCTTTCCTTCGTCG
TATTTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAAAATCCTGCTTGCCAGGGCTGTACACCGGGGGA
GTGGGGTACACTGGAGCCTCCACACACTGGCTTGGTACCTAGAAAGACAG
CACTGTGACAAGGTAGAGCCTTTGAAGGGACAGGAGAGAGAGCTTCACCA
GCCATGGACCCTCACTGTGGCCCTAGCTGCTTTCAACCACTGCCCTTCCA
TCACCACTAAAGCTCGCCCCTGGCTGGCTCAGGCCAAGTACTCCCAAGAC
CCCTCAGAACTTCATGAAGTGTGCTAATAAGACGGCTCAATAGGTAAAGG
CCTTTGCTCATGACTTGCTGGGATAAAGGCATGCGCCACCATGCCCGGCT
AGCATTGAGGTGTCCCGCTGACCAGCTTAATGGCTTTAGTCAGCATGTGG
AGAGGACACCAACCCACAGGGTAGGAGAGAATGGATTCTTACAAGTTGTC
CTCTGACTACCACACACATGCCTCCATCCACTCAATAAAAGGAAGAAAAG
GCGAGGGCAGGTGAGGGGAGGGACTTCATGATGTAGCTTTGGAGCTGGAC
TATCTGGTTTTAAACCCAGATTTTGCTACTCGGCCCTAACTGGCCTCACA
CGGATTGCGCGTTCTCTCTGTAAACCGTATGATTATTGGCCTCCTCTTCC
CAAACCGGGTCTTTCTGATATGGAGTTTTGGGTTTGTCTTCTCTTCCCCA
TGAGGAACCCGCCCTTTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_g24.b1 MSMg01no458_g24.b1 CHROMAT_FILE:
MSMg01no458_g24.b1 PHD_FILE: MSMg01no458_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:02 2005
         (166 letters)



>mm_chr2_154222366_154222931
          Length = 566

 Score =  311 bits (161), Expect = 1e-89
 Identities = 164/165 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcacctctatttgcttatggactgcagatgcactgtgacctgtgacctgtgaactt 61
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcacctctatctgcttatggactgcagatgcactgtgacctgtgacctgtgaactt 261

                                                                       
Query: 62  caacacttgctgccaggacttcagtgccacgatggattgtacagatccttcctttaattg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caacacttgctgccaggacttcagtgccacgatggattgtacagatccttcctttaattg 321

                                                        
Query: 122 tttgtttgtttgtttgtttgggggtatggggcatggttttggttt 166
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttgtttgtttgtttgtttgggggtatggggcatggttttggttt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no458_g24.g1 MSMg01no458_g24.g1 CHROMAT_FILE:
MSMg01no458_g24.g1 PHD_FILE: MSMg01no458_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:02 2005
         (491 letters)



>mm_chr2_154454125_154455015
          Length = 891

 Score =  886 bits (458), Expect = 0.0
 Identities = 473/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgcttgccagggctgtacaccgggggagtggggtacactggagcctccacacactggc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 478 cctgcttgccagggctgtacactgggggagtggggtacactggagcctccacacactggc 419

                                                                       
Query: 61  ttggtacctagaaagacagcactgtgacaaggtagagcctttgaagggacaggagagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttggtacctagaaagacagcactgtgacaaggtagagcctttgaagggacaggagagaga 359

                                                                       
Query: 121 gcttcaccagccatggaccctcactgtggccctagctgctttcaaccactgcccttccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcttcaccagccatggaccctcactgtggccctagctgctttcaaccactgcccttccat 299

                                                                       
Query: 181 caccactaaagctcgcccctggctggctcaggccaagtactcccaagacccctcagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 caccactaaagctcgcccctggctggctcaggccaagtactcccaagacccctcagaact 239

                                                                       
Query: 241 tcatgaagtgtgctaataagacggctcaataggtaaaggcctttgctcatgacttgctgg 300
           |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 238 tcatgaagtgggccaataagacggctcaataggtaaaggcctttgctcatgatttgctgg 179

                                                                       
Query: 301 gataaaggcatgcgccaccatgcccggctagcattgaggtgtcccgctgaccagcttaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 178 gataaaggcatgcgccaccatgcccggctagcattgaggtgtcccgctgaccagcttgat 119

                                                                       
Query: 361 ggctttagtcagcatgtggagaggacaccaacccacagggtaggagagaatggattctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ggctttagtcagcatgtggagaggacaccaacccacagggtaggagagaatggattctta 59

                                                                     
Query: 421 caagttgtcctctgactaccacacacatgcctccatccactcaataaaaggaagaaaa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  caagttgtcctctgactaccacacacatgcctccatccactcaataaaaggaagaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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