BAC Information

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BAC

Clone NameMSMg01-458H08
Chromosome2 (Build37)
Map Location 122,546,695 - 122,722,205
singlet/doubletdoublet
Overlap genePldn, Sqrdl
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458H08.T7 (MSMg01no458_h08.b1)MSMg01-458H08.TJ (MSMg01no458_h08.g1)
ACCAG544284AG544285
length778751
length of high quality
(start - end)
245 (83 - 327)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no458_h08.b1 PHD_FILE: MSMg01no458_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:03 2005CHROMAT_FILE: MSMg01no458_h08.g1 PHD_FILE: MSMg01no458_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,721,965 - 122,722,205)(122,546,695 - 122,546,939)
sequence
NATCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGA
GCGCGGAATTCCAGGGATTTCCCAAGAGACCTGTTACCTTGATTGGTTAG
CTCTATCTCTAAGGGTCTGACTGATTCTCTAATTGATTAAGGCTCTAGGG
ACTTTCCAGGGTGGTTGCTTATTCATTATAGCTGCCTATGTTTGCTTCAG
ACCAGATGACAAGATGTCCTAGGATTGGTTGCCTGAAGCTGTGGTTGACT
GACTACAGATTTCTTGATCCTGATTCTCATTTCGGGGAAATAGCAACTAC
TCTCCTGAATTATCAGTTTTCAGTCTANCTTGGTATCAGATTGGCTTTGT
CTAACTCAGTCCTCTCATTCCCTGTTCTGATTTGTAACTGAATCAAATCA
TTGATTTGTCAGTTCTTTCCCCCCCCCAAGTTATTGTCCAAGGGATAAAT
TAGGAGCTAAGGACCATAAATTTATTGCTGAAATGCTGGCCTTTCTGACT
GCATCTCAGCCTATGAAGTGGGACAAAAGAAGTTGTACTTTTCTTCTGGA
ACTACTTCCTGTTGACATTATAGCATTGTTATTTGAAGGTCCCGTAATGC
TGAAATGCTTACTATATGCTAGGGTTTATGGCATTTTTTCCAAATTATTC
CGATTATGGGAATCCAGCTTTTTTTTTTGTTAACCGGTCCTATTTGATAC
ATTTGTTTTATTCTTACTTCGGTTCATGAGGGACAAGAAAGAATGTGTTC
CTCTTATTCTCCCTAATTCCCCCCCCGG
CCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAAAAAAATTCCTCCCCATTGGGAGAAGTCTATGTC
ATCTCCCTCCACCTACGGTGGGAAAGTGTTGAGTTTGTTAGGCTGAGTAA
GGGATTATGGCCAGGAACATTGGTCACCTTAGAGCATCCACACTGGAGGG
TATGTTCTCAGCAGAGGTGATGACTGCCTGATAGCTGTGTATTATGTAGT
TCTCTCCCTTGACCCTCCCCATCTATATGCTCTGTCCCAACCCCACAGAT
TCATGTGTTTGAACACCTGTTTTCCTGCTGGTAGCACTGTTTTGGGAAAT
TACTTAATCTGTGGGAGGTGAGGCATGCCTGATAGGGTACATTGTTAGGG
GTGGGTCTTTGAGGGCTAGGATCTGGCCTTACTTTCTCTTCTGTTTTCTG
CTTTCTTCTACATCATCACAGACTTCTAATGCTTCAGAGCCATCCTGCCA
TGTCTGACCCACACTGATGGACTAAAATTTCTGATACCAGGAGTCTCAAT
AAACTTTTTTTCCCCTCTTCTGTTGTGCATTTTTGTCACAGTGATGATAA
AAACCTATCTGGCCTGTTGAAGGGGAAAGAACTAAGAATCGATTTGTCTC
TTGATTTCTTTTTTTTTCTGTGAAACTTGTGCTAGTGTGCCCCAGGTCGA
AACTCTTCCACCTTTTCCATATTTTTCCTATGCCCTCTGTTTGCTTTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_h08.b1 MSMg01no458_h08.b1 CHROMAT_FILE:
MSMg01no458_h08.b1 PHD_FILE: MSMg01no458_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:03 2005
         (245 letters)



>mm_chr2_122721765_122722409
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttaccttgattggttagctctatctctaagggtctgactgattctctaattgattaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaccttgattggttagctctatctctaagggtctgactgattctctaattgattaagg 382

                                                                       
Query: 61  ctctagggactttccagggtggttgcttattcattatagctgcctatgtttgcttcagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctagggactttccagggtggttgcttattcattatagctgcctatgtttgcttcagac 322

                                                                       
Query: 121 cagatgacaagatgtcctaggattggttgcctgaagctgtggttgactgactacagattt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatgacaagatgtcctaggattgtttgcctgaagctgtggttgactgactacagattt 262

                                                                       
Query: 181 cttgatcctgattctcatttcggggaaatagcaactactctcctgaattatcagttttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgatcctgattctcatttcggggaaatagcaactactctcctgaattatcagttttca 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no458_h08.g1 MSMg01no458_h08.g1 CHROMAT_FILE:
MSMg01no458_h08.g1 PHD_FILE: MSMg01no458_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:04 2005
         (245 letters)



>mm_chr2_122546495_122547139
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctccccattgggagaagtctatgtcatctccctccacctacggtgggaaagtgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctccccattgggagaagtctatgtcatctccctccacctacggtgggaaagtgttga 260

                                                                       
Query: 61  gtttgttaggctgagtaagggattatggccaggaacattggtcaccttagagcatccaca 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgttaggctgagtgagggattatggccaggaacattggtcaccttagagcatccaca 320

                                                                       
Query: 121 ctggagggtatgttctcagcagaggtgatgactgcctgatagctgtgtattatgtagttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctggagggtatgttctcagcagaggtgatgactgcctgatagctgtgtattatggagttc 380

                                                                       
Query: 181 tctcccttgaccctccccatctatatgctctgtcccaaccccacagattcatgtgtttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcccttgaccctccccatctatatgctctgtcccaaccccacagattcatgtgtttga 440

                
Query: 241 acacc 245
           |||||
Sbjct: 441 acacc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)