CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATCCGCGG
AATTCTGTTATTGCTGGGGCCGAGGCTATCTGTGAGGACAGTGGAATCCC
ATGGGAATCTACAATTTGGAGAGGACTGACGATCAGTCTCTGAAAGGATT
GCTCTGCCCCAACAAGCACCAGTCTTTGATTCTAAAGAACTAACTGCCTC
TTTCTTGTCCTTGCATTACCACGCCAAAGTACACCAAGAGTGCTGAATCT
GTGGCCGCTGGTTCAGTGGGGATAGAATATAATTTCCCTCCGTTTGCTCT
GACTCTTAAATGCCTACTACAGGATGGGGGCCAGTCAATACTCACACTAC
TGGAATTGCAAAAAGAGGCAGGAATTTCAATGTGAGTTTACCAGGGTAAA
GCTTTGTAGCACGTTGGTAGCAACTCAGGATGCAGCCAAGATGGGTAGCC
ACTTGGTCTGAGTGGTACAGACAAGTCTACACACACAGACACAGTCACTG
TGTCTGTCTGGNNGTCCCCCACCACCCTGCCTCCTGCTTGCACAACTTGC
AGGTAAGAAAGCAACCATCTCTTTTCATCCTTCCCTCACTCCTGAGAGCA
AGAACACAGCAGCCGCCCCTGTCGGAAACTCCCTATTATATCAAACGCTA
CTCCTGTGGATATATGCCTCTCCGTTTCCTATCCGCCCCCCTCGTATTAT
GGGCCCCTCCTCGGGACAAACCATTTATACAACCCCAATGTGGTGCCATC
A

NCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGGAGTCCATCACATATTTG
GACTGAAATATCCAGTCTGGTGAACTGACAATTACCAGATTCTTGGCCTC
TCTCCATTATGAGATAGCAATTGTTGCACTAACCAGACCAGTGTCTGTCC
ACCGCTCTAATCAACCCCCTTTTAATAGATATGTATTTTTCATCCTGTCA
GGTCTGTTTCTTTAGTGAACTCTGACTAACACACCTGTGGTGGTGAACTT
GGCAAAATGAGGCCGTTGATACCCACTGAATAGAGCACACTTGTAATGTC
TGGAGATGCTCTTAATAATGTTTATCAAGGCCATTAAAACACTCAGCTCT
TTGCACACAACATTCTTCTCGCATGGATGCTTGTTACCAGAAAGATGTTG
ATCCTGGCGTTTTCTTTTAAATTTCATCTGAAATTATCTTCCTAATTTTT
TTGTAATGCTAGTTACCCAACCCCTCTTCCTGGCCCCCTAGTACTCTTTC
CTCCGCGCTCTTCTCCTTCCGCTATTTTTTTTTCGCTTTTTCTTCCTGGA
GGCGTTATTCTTCCTCTCTTCAACTTTTCTCTTATCTTTTTTCCCCCTTC
CCTTTCCCCCTCTTTTTTCCTAGGTCGTTTCACCCCCCTCGGCCTACATT
ATTATTAATTCCTAGCTTATCTTCCATTCCCTCCCTTTCTTCTTTTTCAT
CCCCCCTCTTTTCTCTCCTTTCTTT

Query= MSMg01no459_e06.b1 MSMg01no459_e06.b1 CHROMAT_FILE:
MSMg01no459_e06.b1 PHD_FILE: MSMg01no459_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:07 2005
         (458 letters)



>mm_chr2_106570916_106571773
          Length = 858

 Score =  785 bits (406), Expect = 0.0
 Identities = 434/444 (97%), Gaps = 2/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattctgttattgctggggccgaggctatctgtgaggacagtggaatcccatgggaatc 72
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattctgttagtgctggggccgaagctatctgtgaggacagtggaatcccatgggaatc 599

                                                                       
Query: 73  tacaatttggagaggactgacgatcagtctctgaaaggattgctctgccccaacaagcac 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tacaatttggagaggactgacgatcagtctctgaaaggattgctctgccccaacaagcac 539

                                                                       
Query: 133 cagtctttgattctaaagaactaactgcctctttcttgtccttgcattaccacgccaaag 192
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagtctttgattccaaagaactaactgcctctttcttgtccttgcattaccacgccaaag 479

                                                                       
Query: 193 tacaccaagagtgctgaatctgtggccgctggttcagtggggatagaatataatttccct 252
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cacaccaagagtgctgaatctgtggccgctggttcagtggggatagaatataatttccct 419

                                                                       
Query: 253 ccgtttgctctgactcttaaatgcctactacaggatgggggccagtcaatactcacacta 312
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctgtttgctctgactcttaaatgcctactacaggatgggggccagtcaatactcacacta 359

                                                                       
Query: 313 ctggaattgcaaaaagaggcaggaatttcaatgtgagtttaccagggtaaagctttgtag 372
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 358 ctggaattgcaaaaagaggcaggaatttcgatgtgagtttaccagggtaaagctttgtag 299

                                                                       
Query: 373 cacgttggtagcaactcaggatgcagccaagatgggtagccacttggtctgagtggtaca 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 298 cacgttggtagcaactcaggatgcagccaagatgggtagccacttggtctgaggggtaca 239

                                   
Query: 433 gacaagtctacacacacagacaca 456
           |||||| |||||||||  ||||||
Sbjct: 238 gacaagcctacacaca--gacaca 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_e06.g1 MSMg01no459_e06.g1 CHROMAT_FILE:
MSMg01no459_e06.g1 PHD_FILE: MSMg01no459_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:08 2005
         (374 letters)



>mm_chr2_106423118_106423891
          Length = 774

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccggagtccatcacatatttggactgaaatatccagtctggtgaactgacaattaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccggagtccatcacatatttggactgaaatatccagtctggtgaactgacaattaccag 260

                                                                       
Query: 61  attcttggcctctctccattatgagatagcaattgttgcactaaccagaccagtgtctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcttggcctctctccattatgagatagcaattgttgcactaaccagaccagtgtctgt 320

                                                                       
Query: 121 ccaccgctctaatcaacccccttttaatagatatgtatttttcatcctgtcaggtctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccgctctaatcaacccccttttaatagatatgtatttttcatcctgtcaggtctgtt 380

                                                                       
Query: 181 tctttagtgaactctgactaacacacctgtggtggtgaacttggcaaaatgaggccgttg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttagtgaactctgactaacacacctgtggtggtgaacttggcaaaatgaggccgttg 440

                                                                       
Query: 241 atacccactgaatagagcacacttgtaatgtctggagatgctcttaataatgtttatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacccactgaatagagcacacttgtaatgtctggagatgctcttaataatgtttatcaa 500

                                                                       
Query: 301 ggccattaaaacactcagctctttgcacacaacattcttctcgcatggatgcttgttacc 360
           || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 501 ggtcattaaaacactcagctctttgcacacaacattcttcttgtatggatgcttgttacc 560

                         
Query: 361 agaaagatgttgat 374
           ||||||||||||||
Sbjct: 561 agaaagatgttgat 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)