BAC Information

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BAC

Clone NameMSMg01-459F17
Chromosome2 (Build37)
Map Location 42,272,205 - 42,288,973
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459F17.T7 (MSMg01no459_f17.b1)MSMg01-459F17.TJ (MSMg01no459_f17.g1)
ACCAG544971AG544972
length782791
length of high quality
(start - end)		425 (41 - 465)387 (70 - 456)
definitionCHROMAT_FILE: MSMg01no459_f17.b1 PHD_FILE: MSMg01no459_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:15 2005CHROMAT_FILE: MSMg01no459_f17.g1 PHD_FILE: MSMg01no459_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,288,553 - 42,288,973)(42,272,205 - 42,272,591)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTATATTTTGTTAACATTTTATGTATCTAGTTTCTGAGACGCTTAAAAA
GATAATATCACATTTAATTGAAAAATTGTTCTTCTATGGTCATATTTTGC
ATATCAATATTCATTCATTTAGAACAAACAAAATCTTGCTCATAATAACA
ATAGTAATTCCAGTTACTGATGCCTGTGATGTCAGAAGCAACCTAACTGT
TCATTTCCCCTGTGTTTTGCATAAATCTCTACAACTGTGCCATCAAAAGG
AAGCTATTATCTCCCAAAGGAAACTTCAAACTGTTAAGTAATTTGCCAAG
GTTATTCTAAAAATAAATACTGGGATAGTAGAATTTAAAGCAAGAAGTCC
AAAGTCTATGTTCTTTCCACCAGGCTCTGTAGAGGTTACAAATGACCTAA
TAGATTGCCTTGCCCAGCAGAGCTAGAAATTGCTTTCAGAATCATGCCTG
CATTAGCAGCATGAAGTTGATCCCTATGTGATAATTGTGCCATTAATGTG
ATAGAAATATTGAACGACTCAAAACCTGATGGCCCCGGCCTAAGTTTAAA
GGGAAGAAGAAATTGTCTACTGCTAGTTTCACTGGGGCATTTCCGAACAT
TTCTAGGCCAATGGATCCAATGTAAAAACCAAAACCCGACTTTTTCCTTT
ATGTCGTAAAAGGAGTTATTTATCCCGGTTTTGGGAATAAACAAAATTGG
GGACCATCTTGAACACACGGGGTGACCAAAAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGACTGGTACTGTAAACCTAACCATACTAC
AAATTCAGTGGAAGAAATTTCACAGGTCCCATACAGGATGAAGTTCAGGA
AATTAATAATACTGGATGAAGTTCAGGAAATTAATACTGACTGGCAGAGG
CAGATTCATTCTTGTCTAGCCATGAGCACCTAATAGATTATCAAATCCCA
CAGTCACAGATGGTCAAACTTAAACACATATACATTGGAATAACAGTACA
TAGATTCATATGCATATATGTTATAATTTAAAAAGATATCAGGAATGCAA
AAATGAATAAAGGATATAGGAGAAATTGAAGGAGAGTGGGTATAAATAAT
TGGGATGCAGNACTCATGTGTGAAATTATCAATCTATATTANATTAATAA
AATACAACAAAGCATACTGAAAAAACTAANACAAATACCTATACAAACAC
TTCTCCTAAGAGGATATATAAATGGCACATATAGTAAAAAATGCTCCACC
TATGATGCCAACTGGGAAATGGGAATCCTTCCCAAATTGAGATACTTTAC
CGCTGCTCCTTTTTATATAAAACGGACCCAAATTATTATGGGACCTGCTG
GTGGGGAGGTAACAGAAAACCTTGTGTGGGCCCGCCCCAATAGCTTACTC
CCCTCGCCGAGTCTGGGCTAATTTTTTTTTCTTTTTTTTCACCTCATCCA
TTTTTCTTCTCCTTCAGCCCTTTTTTCCCTCTTTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_f17.b1 MSMg01no459_f17.b1 CHROMAT_FILE:
MSMg01no459_f17.b1 PHD_FILE: MSMg01no459_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:15 2005
         (425 letters)



>mm_chr2_42288349_42289173
          Length = 825

 Score =  783 bits (405), Expect = 0.0
 Identities = 417/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatattttgttaacattttatgtatctagtttctgagacgcttaaaaagata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattctttatattttgttaacattttatgtatctagtttctgagacgcttaaaaagata 566

                                                                       
Query: 65  atatcacatttaattgaaaaattgttcttctatggtcatattttgcatatcaatattcat 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatcaaatttaattgaaaaattgttcttctatggtcatattttgcatatcaatattcat 506

                                                                       
Query: 125 tcatttagaacaaacaaaatcttgctcataataacaatagtaattccagttactgatgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcatttagaacaaacaaaatcttgctcataataacaatagtaattccagttactgatgcc 446

                                                                       
Query: 185 tgtgatgtcagaagcaacctaactgttcatttcccctgtgttttgcataaatctctacaa 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgatgtcagaagcaacctaactgctcatttcccctgtgttttgcataaatctctacaa 386

                                                                       
Query: 245 ctgtgccatcaaaaggaagctattatctcccaaaggaaacttcaaactgttaagtaattt 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 ctgtgccatcaaaaggaagctattatctcccaaaggagacttcaaactgttaagtaattt 326

                                                                       
Query: 305 gccaaggttattctaaaaataaatactgggatagtagaatttaaagcaagaagtccaaag 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccaaggttattctacaaataaatactgggatagtagaatttaaagcaagaagtccaaag 266

                                                                       
Query: 365 tctatgttctttccaccaggctctgtagaggttacaaatgacctaatagattgccttgcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctatgttctttccaccaggctctgtagaggttacaaatgacctaatagattgccttgcc 206

            
Query: 425 c 425
           |
Sbjct: 205 c 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_f17.g1 MSMg01no459_f17.g1 CHROMAT_FILE:
MSMg01no459_f17.g1 PHD_FILE: MSMg01no459_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:15 2005
         (387 letters)



>mm_chr2_42272005_42272791
          Length = 787

 Score =  721 bits (373), Expect = 0.0
 Identities = 383/387 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgactggtactgtaaacctaaccatactacaaattcagtggaagaaatttcacaggtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgactggtactgtaaacctaaccatactacaaattcagtggaagaaatttcacaggtcc 260

                                                                       
Query: 61  catacaggatgaagttcaggaaattaataatactggatgaagttcaggaaattaatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacaggatgaagttcaggaaattaataatactggatgaagttcaggaaattaatactg 320

                                                                       
Query: 121 actggcagaggcagattcattcttgtctagccatgagcacctaatagattatcaaatccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggcagaggcagattcattcttgtctagccatgagcacctaatagattatcaaatccc 380

                                                                       
Query: 181 acagtcacagatggtcaaacttaaacacatatacattggaataacagtacatagattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtcacagatggtcaaacttaaacacatatacattggaataacagtacatagattcat 440

                                                                       
Query: 241 atgcatatatgttataatttaaaaagatatcaggaatgcaaaaatgaataaaggatatag 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcatacatgttataatttaaaaagatatcaggaatgcaaaaatgaataaaggatatag 500

                                                                       
Query: 301 gagaaattgaaggagagtgggtataaataattgggatgcagnactcatgtgtgaaattat 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 501 gagaaattgaaggagagtgggtataaataattgggatgcagtactcatgtgtgaaatcat 560

                                      
Query: 361 caatctatattanattaataaaataca 387
           |||||||||||| ||||||||||||||
Sbjct: 561 caatctatattaaattaataaaataca 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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