BAC Information

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BAC

Clone NameMSMg01-459G07
Chromosome2 (Build37)
Map Location 35,152,136 - 35,152,332
singlet/doubletsinglet
Overlap geneGsn
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14
Downstream geneStom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459G07.T7 (MSMg01no459_g07.b1)MSMg01-459G07.TJ (MSMg01no459_g07.g1)
ACCAG544998AG544999
length827852
length of high quality
(start - end)
224 (72 - 295)198 (77 - 274)
definitionCHROMAT_FILE: MSMg01no459_g07.b1 PHD_FILE: MSMg01no459_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:18 2005CHROMAT_FILE: MSMg01no459_g07.g1 PHD_FILE: MSMg01no459_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTATXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAAAAGAGGATCCGCG
GAATTCAGATTTTCTCAACTGGGGAACGGCGGTAACCCGTAAGTATAGCT
TTACGAGGTACGCCTGGTCTTGAACTTTCTAAGGAAATTCAAGACAGTCT
ATCAGAAGTAAAGTGGAAAATAGCTTTATAAGATATGTTTGGTCTTGAAC
TTTCTCTAGTGCTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTG
GTTAAGGCAGGGCGGATTCTGGATGAAGTTCAGGATAATCTATCAGAAGT
AAAGCGGCGAGAGATTTTTTGATCACAGAGAACATATGGTACACAAAATA
AGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTAGGCCA
GGTTAGAATACCTGCTTTCAGATTATTTCTGTAGTTTTCCTTATTTTCCT
CCCCATTTTTTATTCCCTCTTTCCTAGCCTTTCCATGTATAACTGACCTC
TCTCCTCCCCCCCCATTGTTATCTCTTCTTGACCCTTTTTCCTTTCTTCC
CTCTTTTTATCCTTTTCGCCTTCCCCTTTTTTATTTTCTTTGTTCTCCTC
TCTCTTTCTCCCTTACTTTCGCTTCCTTTCCCTCTTTTCTCCACCTTTCC
TTCTCTTTTTTTTTTTTTCCTTTTTTCTTTCTCTTTTTCTTTATCTTTCC
TATTTTTTTTCGTATACATTTGTTTCTTCTCTCCTTTTCTTTTTCCCCTC
TCTTTCTTATATCCTCTCCTCATATTTCTCCCCCCCTTTTTCTCTCCACG
CTCCGTCCTATTCTATTTCTCTTCTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCCCAGGCTCAGTCACTGGC
CCCGTTACACCAGCTAAAGGATAGAGAAGGGCAGATTGAGGCTTTATCAA
TGTAGTCAAACTGGGGAGAACAAAAAAAAGGGGCCCCAAGCCCTCCCCCA
AGTCCATCTTCACAGCACTGACTTGAGCTTTGGGTTTAGATATAGGGAGA
GTTGGGGCTAGAGGTGTGTATGACTCCTCCTCTCTGCTCTCGGTCTCTTC
TGGGTCTGCCCTTCTTTTTTTTTTTTTACTTCTGTTCCTCCCACCACCTT
TATCGGACTCTTCCGTTCTTATTCTAATACCCTTCTCCCCTTCTCCCCTT
ATTTTTCTTATCTTCCTCTCCGCCCAACTAAATTTTTCCGCCCTATCATT
ACTCTTATCTACTTCTTCTTTACTTTCATATTCTTCACCCCTCTCCTATC
TCATCCCTTTTATCTTTTGACTCTATTCTTGTTCTTTTCCCTCTTACTCT
TCATCTATTTTCTGACCTATATTAACCACCCGATCTTATTCTTCCATACC
TCGTGCCGCTATTTTCACTTTATTTTCTATCCCCAATTATTTCCCCCTCC
CATAGTTTTTATTTTTTTCTTCTTTATCTTTACTCTTCTTCTCTTCCTCG
TCTATCTTCCTCTCCTTTCTATTCTCTTCCCCTTTCTTCCCCACCGACAC
ATCCCCTATTTCTCTCTCTATCTTTCACTATTCCTCCCCGTTTAGTTTAT
ATTATTTTTTTTTATTTTGTCTTCTTCACATCTCAATTTTTTCTACTTTT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_g07.g1 MSMg01no459_g07.g1 CHROMAT_FILE:
MSMg01no459_g07.g1 PHD_FILE: MSMg01no459_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:18 2005
         (198 letters)



>mm_chr2_35151936_35152533
          Length = 598

 Score =  381 bits (197), Expect = e-110
 Identities = 197/197 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagcccaggctcagtcactggccccgttacaccagctaaaggatagagaagggcagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagcccaggctcagtcactggccccgttacaccagctaaaggatagagaagggcagat 260

                                                                       
Query: 61  tgaggctttatcaatgtagtcaaactggggagaacaaaaaaaaggggccccaagccctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggctttatcaatgtagtcaaactggggagaacaaaaaaaaggggccccaagccctcc 320

                                                                       
Query: 121 cccaagtccatcttcacagcactgacttgagctttgggtttagatatagggagagttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaagtccatcttcacagcactgacttgagctttgggtttagatatagggagagttggg 380

                            
Query: 181 gctagaggtgtgtatga 197
           |||||||||||||||||
Sbjct: 381 gctagaggtgtgtatga 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)