BAC Information

Click to search

BAC

Clone NameMSMg01-459K05
Chromosome2 (Build37)
Map Location 13,191,783 - 13,192,202
singlet/doubletsinglet
Overlap geneRsu1
Upstream geneItga8, 2310047O13Rik, LOC100040837, Pter, C1ql3
Downstream geneCubn, Trdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459K05.T7 (MSMg01no459_k05.b1)MSMg01-459K05.TJ (MSMg01no459_k05.g1)
ACCAG545183AG545184
length836751
length of high quality
(start - end)
42 (115 - 156)420 (76 - 495)
definitionCHROMAT_FILE: MSMg01no459_k05.b1 PHD_FILE: MSMg01no459_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:38 2005CHROMAT_FILE: MSMg01no459_k05.g1 PHD_FILE: MSMg01no459_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTCACACGAGACCGCGGAATC
CTGATTTCCTCAGCAATTAGCTGAAGGGATGTGAATTTTTTCAATGCTTT
TTCTCTTCTACCGAAATGATCACGTGGCTTTCTTTCTTTGAGTTTGTTTA
TGTAATGGATTATGTTGATGGATTTCTGTACACTGCCCCCTTCCCGCCCT
CCCCCCTATGTTTTCTACTTTATTGACACTTATGCTAATTTTTATCTTCC
CTTTCATTTCTTCCGTTCCCCCCTCCTTTCGCCTCCCTGCCTCCCTTTCC
CCTTTTTTTTTTTTTTCCCCCTCTTCCCCTCTTTCCCCCCTTTTTTTTCT
TTCTCCCTCCCTCTTCCCGTCCACTTCTCTCCCCTCTTTTCCCCTTTTCT
TCTTCTCCTTCCTTTCCCCTTCTTTTCTCTTTTTCCCTCTTTCTCCACCC
CCCCTTTTTTTCCCTTTTCCCCTCCCTCTCTTACCTTTCTCCTTCCTTCT
TCCCCCCCACCTTATTCTCCCTTCTTCCCCCTTTTTTTTTCTCCCCCCTT
TCTCCTCCTTTCCTTCCCCCTCTTTACTTTATTTCTCTCCCCCACTCCTT
CTTCCCCCTCTTTTCTCTTCCTTCCCCTTTTATTCCTCCCCTTCCCTTCT
TTTGTTCCCTTTCTTCCTTTTTTCCTTACCTATTTTTTTTTCCTTACCTT
TTTTTATTTTCTTCATCTCTCTCCTACCTCGCACCTTACCCTTTCTCCCC
CTCCTTCTCCTTTCTCCCCTTCTCTTTGTTTTCTCCCCCCCATTATTCCC
TTCCCCCTCCTTTCATTCTTTTTTTTTTCTTTTTTN
CAATGATAATGNTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGTGCCAGTAGTATTTTCAACATT
TTCCTTCATTACGTATTCCTGGGTCATTCTCCCATTTGTGTTCAGGCATT
GCTCAATCTTGTGATCCAAGCTCAGCACCCGTTTAATCAGGGTGTTGCTT
TCAGCTGTGAACTTATATGACTCTTACTTTATTGTTTTTTTCTCATCTGT
AAAACCAGACAGGGAACTCAGTACAAGTGGGAATGGTCATAAACTCCATT
GCCTGTGCCCTTCTCATGGTTATCTCCTCTTCTCCACATGGAGACGGTTA
TCCCCATGTGTAAATGCTGCATCACTATCGCCAGATTTTGTGTTGAGAAT
TCTAGTGTCCACTTTTTCATGATCTTTAAATTCTGCAAACTAATTCTGGT
CTTTGAAAACACTTTTTAAGTAAGTCACCACGCTTCTGTAGGTTCCTGTG
ACTTCATTTGGATCCTCTGAGAGCTTATCTGTTGAGAGTGGTACCCCCAC
ATTCCTCAGCGGGATATACAAAGTCTGATTCTGATCATAAACCGATTTCT
TCCTTGTCTTCATTCCAAGCTACTGTGAAAAAACCTCCACGGAATGACCC
TTGATCCGCCCCATCTTCCCTGATNTGCCCTGATTTGCGTTCCTCCCATC
TAAAATGTCTTTTCTCCTGAACGCCCCTTACTTTAATTGCTCTCCACCCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_k05.g1 MSMg01no459_k05.g1 CHROMAT_FILE:
MSMg01no459_k05.g1 PHD_FILE: MSMg01no459_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:38 2005
         (420 letters)



>mm_chr2_13191583_13192402
          Length = 820

 Score =  797 bits (412), Expect = 0.0
 Identities = 418/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgccagtagtattttcaacattttccttcattacgtattcctgggtcattctcccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgtgccagtagtattttcaacattttccttcattacgtattcctgggtcattctcccat 561

                                                                       
Query: 61  ttgtgttcaggcattgctcaatcttgtgatccaagctcagcacccgtttaatcagggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtgttcaggcattgctcaatcttgtgatccaagctcagcacccgtttaatcagggtgt 501

                                                                       
Query: 121 tgctttcagctgtgaacttatatgactcttactttattgtttttttctcatctgtaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctttcagctgtgaacttatatgactcttactttattgtttttttctcatctgtaaaac 441

                                                                       
Query: 181 cagacagggaactcagtacaagtgggaatggtcataaactccattgcctgtgcccttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagacagggaactcagtacaagtgggaatggtcataaactccattgcctgtgcccttctc 381

                                                                       
Query: 241 atggttatctcctcttctccacatggagacggttatccccatgtgtaaatgctgcatcac 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgggcatctcctcttctccacatggagacggttatccccatgtgtaaatgctgcatcac 321

                                                                       
Query: 301 tatcgccagattttgtgttgagaattctagtgtccactttttcatgatctttaaattctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatcgccagattttgtgttgagaattctagtgtccactttttcatgatctttaaattctg 261

                                                                       
Query: 361 caaactaattctggtctttgaaaacactttttaagtaagtcaccacgcttctgtaggttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caaactaattctggtctttgaaaacactttttaagtaagtcaccacgcttctgtaggttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)