BAC Information

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BAC

Clone NameMSMg01-459N13
Chromosome2 (Build37)
Map Location 164,132,872 - 164,133,261
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a
Downstream geneSvs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459N13.T7 (MSMg01no459_n13.b1)MSMg01-459N13.TJ (MSMg01no459_n13.g1)
ACCAG545343AG545344
length805773
length of high quality
(start - end)		390 (66 - 455)393 (71 - 463)
definitionCHROMAT_FILE: MSMg01no459_n13.b1 PHD_FILE: MSMg01no459_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:55 2005CHROMAT_FILE: MSMg01no459_n13.g1 PHD_FILE: MSMg01no459_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTTGTTACAATATCATGCAGTTAGTTTCATGTTTGATTTGTTTGTTTC
TTTCATTTTGCTTCCCCACCCCCAATCTTTTTTTTCCTTAGTAAAAGTAC
TTTATTTTCTTCTTGTACTTGCTTTATATCTCACTTACAAAGTTATGAAG
TTCACAGCTTTTATACCAAAATGTAAGAAGGCTGTTTAGAAATATCTTTG
CAGTCAAATGTCACCTGACATTTCTTCTAATCCATATTGAAAAACCAAGG
TTGGGGTAGCTCTGTTTTTCTACTTCCCCCCACAGACTTTCCTTCTCTAC
TCTCTGCCCCCACTGAGCTACTCCTGGTCTGGGCTGAGCTGGTCTGGGCC
AGTCTAGGCCATGTCCTTGGGGCTGGAGGTGAAGCGGAGGTAAGTGGTAG
GTTTGGTTTATAGTAGGTNCNCNNNNCNCCNNCTNTTTTTCCTTTTCCTT
CTTCTTCCCCTTCTCTTCTCTTCCTTCCCTTCCTCTCTTCTTCTTCCCTC
TCCTCTTCCTCTCCTTTCTCTCCTTCGTCCTCCTTCCTTTTCCTTTTCCC
CTTCTCCTTCCCTTTTTCTCTTTTNTCCTTTTCCTCCTTTTTTCGTGCGC
TTCGCTTCTTTTCTTTTTCTTTTCCCCCCTGCTCTCTCTTCTCCCGTCTT
TTCTTTGCCCTCTTCTCTCCGTGTTCTCTGTCTGTTTCTTTTTCCCCCCG
TTCTTCTCTCGCTGTTCCTTTTTCTTTTTCCCTTTCCTTCGTCCTTCCCC
TTCTT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATCTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTATC
TATCTATCTATCTATCTATCTATCTATCTATTTATTTATTTCGGTTTTTC
GAGACAGGGTTTCTCTGGCTGTCCGGGAACTTACTCTGTAGGCCAGGCTG
GCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTA
CTGGCATGCGCCACCACTGCCCAGCCTAGAATTCTATTTTTAGAAAAGAT
ATTTTTTATGTGTGGATCTGTGTGAGTATGTGCACATGAATACAGTGCCT
ACAGAGACCAGAACATGAGATGTCCTGGAATTGGAATTACAGGCAGTTGT
GAGTTGTCTGATATGGGTGGTGGAAAATGAATTCAGGTTGTCTGTAAGAA
GTTAAATTCTCTTTACTATCAGGGTGGTTCCCCCGGCCCCTAAAAAATCA
TCTTTTAAATTTTCTTTTAGGGGGTTCTTTATTTGAGAAGTAAAGAGGGG
GGTTTTTATCGTCTTTTGCCCTTCTATAGTAAGGGGGGCGCGCTTTGTGG
GCTCGCTTTTGGGCTTTTTATTTGTGGGGACTGGTTGTGGTGTTTTTTTT
AAGGTTTTTTCGTCCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_n13.b1 MSMg01no459_n13.b1 CHROMAT_FILE:
MSMg01no459_n13.b1 PHD_FILE: MSMg01no459_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:55 2005
         (390 letters)



>mm_chr2_164132671_164133461
          Length = 791

 Score =  669 bits (346), Expect = 0.0
 Identities = 379/394 (96%), Gaps = 9/394 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   atgcagttagtttcatgtttgatttgtttgtttctttcattttgcttccccacccccaat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atgcagttagtttcatgtttgatttgtttgtttctttcattttgcttccccacccccaat 532

                                                                       
Query: 62  c-ttttttttccttagtaaaagtactttattttcttcttgtacttgctttatatctcact 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctttttttttccttagtaaaagtactttattttcttcttgtacttgctttatatctcact 472

                                                                       
Query: 121 tacaaagttatgaagttcacagcttttataccaaaatgtaagaaggctgtttagaaatat 180
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 471 tacaaagttatgaagttcacagcttttatactaaaatttaagaaggctgtttagaaatat 412

                                                                       
Query: 181 ctttgcagtcaaatgtcacctgacatttcttctaatccatattgaaaaaccaaggttggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctttgcagtcaaatgtcacctgacatttcttctaatccatattgaaaaaccaaggttggg 352

                                                                       
Query: 241 gtagctctg----tttttctacttccccccacagactttccttctctactctctgccccc 296
           |||||||||        ||||||||||||||||| |||||||||||||||||||||||  
Sbjct: 351 gtagctctgggca----tctacttccccccacagcctttccttctctactctctgccctg 296

                                                                       
Query: 297 actgagctactcctggtctgggctgagctggtctgggccagtctaggccatgtccttggg 356
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 295 actgagctactcctggtctgggctgagctggtctgggccagtctgggccatgtccttggg 236

                                             
Query: 357 gctggaggtgaagcggaggtaagtggtaggtttg 390
           ||||||||||||||||||||||||||||||||||
Sbjct: 235 gctggaggtgaagcggaggtaagtggtaggtttg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 791
Length adjustment: 9
Effective length of query: 381
Effective length of database: 782
Effective search space:   297942
Effective search space used:   297942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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