BAC Information

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BAC

Clone NameMSMg01-460C01
Chromosome2 (Build37)
Map Location 110,171,160 - 110,171,625
singlet/doubletsinglet
Overlap genenone
Upstream geneKif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1
Downstream gene1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C01.T7 (MSMg01no460_c01.b1)MSMg01-460C01.TJ (MSMg01no460_c01.g1)
ACCAG545558AG545559
length744721
length of high quality
(start - end)
458 (63 - 520)519 (68 - 586)
definitionCHROMAT_FILE: MSMg01no460_c01.b1 PHD_FILE: MSMg01no460_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:17 2005CHROMAT_FILE: MSMg01no460_c01.g1 PHD_FILE: MSMg01no460_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCA
TTATTTCCAAGAAAACAGGGAAGTGATGGTATAGTGTGTGAATTCATTAG
GATGAGGAGAAAAAAAACAACAAATTATGGGAGCAATTAAAATATCAGCA
TCTTTTAGGTGTTGTCCAAAATATTTGCTGGACCTTACCTCCGAAATTAG
AACACTTTCTTTTATTTACTTTCTATTTTTATTAGACAGCTGTAATCCAA
AACATGAGTTCCCTTACCAGACTTTCCGAAACTACAGCTTATAAAAAGCA
AGAGTTATTTTTAGGGGTTTCTGAACAGAGTCTAGGTCAAAAACTGCAGT
AAATGTTCCCTAGCCAAGCATATTTATAATAGAAGTGCACCCGTAGACAT
ACAAGTATGGCCTTGTTGGGGTGAGCTTGGAGATTTCAAAAACCCATTGC
AGGTCCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCACACACACACACACACTCATCTATACTACCCATTATTCATTC
TTGCACAATTTACCTTTGTTCCACTGTTTAATCTCTCTTCCGTCTTATCC
CCCCATGCCTGCCCAATCCTGATATTACTCGCACTTTCTTTTTTTTATGC
TCCCTCTGTTCATATTTGTCCCCACACCTTATAAATCCCTTTAACATTAT
GCTCTCCAATCTCAACCTGTTTGTCTCCTTATAAACATCCACTN
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTGATCCACTTAGACTTGAGCTTTGTACAAAG
AGATAAGAATGGATCAATTTGAATTCTTCTACCTGCTAACCACCAGTTGA
GCCAGCACCATTTGTTAAAAATGCTATCTTTTTTCTGCTGGATGGTTTTA
GCTTCTTTGTCAAAGATCAAGTGACCATAGATGTGTGGGTTCATTTCTGG
GTCTTCAATTCTATTCCATTGATCTATCTGTCTGTCATTGTACCAGTACC
ATGCAGTTTTTATTACAATTGCTTAGTAGTATGGCTCAGAGTACCCAAGA
TACAATTTGCAAAACATATGAAACTCAAGAGGAAGGAATACCAAAGTGTG
GACACTTAGATCCTTCTTAGAAGGGGGAACAAAATACCCATGGAAGAAGT
TACAGAGACAAAGTTCGGAGCAGAGACTGAAGGAATGACCATCCAGAGAC
TGCCCTACATGGGAATCCATCCCAAAAACAACCAGCAAAACCAGACGGTA
TTGCGGATGCCAACAAGAGCTTACTGATTTGTTGTTGTTGTTGTTGCTGT
TGGTCGCGAAATAGTTCTTCTCTCGCATTCTCTTGTATTTGTGTTCTGCC
AGTTCGCTCTCCTCACTTGTGTTATTTTCCCATTTATATTTCCCCGCTTT
CTCCCCTTTCCCACTTCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c01.b1 MSMg01no460_c01.b1 CHROMAT_FILE:
MSMg01no460_c01.b1 PHD_FILE: MSMg01no460_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:17 2005
         (458 letters)



>mm_chr2_110171030_110171887
          Length = 858

 Score =  820 bits (424), Expect = 0.0
 Identities = 452/466 (96%), Gaps = 8/466 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacagggaagtgatggtatagtgtgtgaattcattaggatgaggagaaaaaaaacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaacagggaagtgatggtatagtgtgtgaattcattaggatgaggagaaaaaaaacaaca 537

                                                                       
Query: 61  aattatgggagcaattaaaatatcagcatcttttaggtgttgtccaaaatatttgctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aattatgggagcaattaaaatatcagcatcttttaggtgttgtccaaaatatttgctgga 477

                                                                       
Query: 121 ccttacctccgaaattagaacactttcttttatttactttctatttttattagacagctg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ccttacctccaaaattagaacactttcttttatttactttctatttttattagacagctg 417

                                                                       
Query: 181 taatccaaaacatgagttcccttaccagactttccgaaactacagcttataaaaagcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 taatccaaaacatgagttcccttaccagactttccgaaactacagcttataaaaagcaag 357

                                                                       
Query: 241 agttatttttaggggtttctgaacagagtctaggtcaaaaactgcagtaaatgttcccta 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agttattcaaaggggtttctgaacagagtctaggtcaaaaactgcagtaaatgttcccta 297

                                                                       
Query: 301 gccaagcatatttataatagaagtgcacccgtagacatacaagtatggccttgttggggt 360
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 296 gccaagcatatttataataaaagtgtacccgtagacatacaagtatggccttgttggggt 237

                                                                       
Query: 361 gagcttggagatttcaaaaacccattgcaggtccag--------tctctctctctctctc 412
           ||||||||||||||||||||||||||||||||||||        ||||||||||||||||
Sbjct: 236 gagcttggagatttcaaaaacccattgcaggtccagtctctctctctctctctctctctc 177

                                                         
Query: 413 tctctctctctctctctctctctctctctctctcacacacacacac 458
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tctctctctctctctctctctctctctctctctcacacacacacac 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 30
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)