Query= MSMg01no460_c05.b1 MSMg01no460_c05.b1 CHROMAT_FILE:
MSMg01no460_c05.b1 PHD_FILE: MSMg01no460_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:18 2005
(386 letters)
>mm_chr2_111340688_111341477
Length = 790
Score = 424 bits (219), Expect = e-123
Identities = 347/391 (88%), Gaps = 14/391 (3%)
Strand = Plus / Minus
Query: 1 tgaatatgtcac-atgtttatgtcatcttacatatctcctctattttattactt-ctcat 58
||||||||| || ||||||| ||||||||||||| ||||||||||||||| || ||||
Sbjct: 586 tgaatatgtaacgttgtttatatcatcttacatatatcctctattttatta-ttaatcat 528
Query: 59 aaaaatcatatgtaatacatatcattatgtc-ttttttataaagatgacattcaaacctt 117
|| ||||||||| |||| ||||||||||||| |||||||| ||||||| || ||||| ||
Sbjct: 527 aataatcatatgcaatatatatcattatgtctttttttattaagatgatatccaaacttt 468
Query: 118 ataaaagataaataagtaccca-aatcatatttagcaaagcttacgtggaattg-aattc 175
|||||| ||||||||| ||||| ||||||||||||||||| ||| |||||| || || ||
Sbjct: 467 ataaaaaataaataaggacccataatcatatttagcaaagtttaagtggaa-tgcaactc 409
Query: 176 aacagcttttaactttaaaattctgacaaggaatagtgatcaa--ttaatgtaagtcata 233
|||| ||||||||||||||||| ||||| ||| |||||| | |||||||||||||||
Sbjct: 408 aacatcttttaactttaaaattaagacaatgaaaagtgat--aggttaatgtaagtcata 351
Query: 234 ttctttgtgccagcatgacaagtgactggggtactcttattt-ttttcacc-ttttaaaa 291
||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||
Sbjct: 350 ttctttgtgccagcatgacaagtgactagggtactcttaattcttttcactgttttaaaa 291
Query: 292 ccaattgctgtattctacagggtatcaaacactgtgaaggcaaatcatggtggtaaattt 351
||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 290 ccaattgctatattctacagggtatgaaacactgtgaaggcaaatcatga-ggtaaattc 232
Query: 352 ggtctccatatcacacttgataaagtactat 382
||||||||||||||||||||||| |||||||
Sbjct: 231 ggtctccatatcacacttgataatgtactat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 790
Length adjustment: 9
Effective length of query: 377
Effective length of database: 781
Effective search space: 294437
Effective search space used: 294437
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_c05.g1 MSMg01no460_c05.g1 CHROMAT_FILE:
MSMg01no460_c05.g1 PHD_FILE: MSMg01no460_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:18 2005
(580 letters)
>mm_chr2_111285906_111286882
Length = 977
Score = 816 bits (422), Expect = 0.0
Identities = 544/590 (92%), Gaps = 19/590 (3%)
Strand = Plus / Plus
Query: 1 ctgtcaactgtgaagaatgga----a--ctgtctt-agtttgtgtgttattgctgtgaag 53
|||||||||||||||||| | | ||||||| | ||||||| ||||||||||||||
Sbjct: 194 ctgtcaactgtgaagaat--atcacagtctgtcttca-tttgtgttttattgctgtgaag 250
Query: 54 agacaatttgtctgcccctcagttagacacc-atttttgcaattaaatgtgtatactaaa 112
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 251 agacaatttgtctgcccctaagttagacaccaatttttgcaattaaatgtgtatactgaa 310
Query: 113 ggattccagccaaagagattaaactttgagtgtgtatactaagggtgtggctgcatctca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 311 ggattccagccaaagagattaaactttgagtgtgtatactaagggtgtggctgcatcgca 370
Query: 173 gccagatcacatgaacctagaaggtctttggatgtgatttgagtgtccttattgctggat 232
||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct: 371 gccagatcacatggacctagaaggtgtttggatgtgatatgagtgtccttattgatggat 430
Query: 233 taaaattcctcta--gaaatatgtacatatgaatgtaataacaactaatgaaaagaaaga 290
||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct: 431 taaaattcctctacagaaatatgtagatatgaatgtaataaaaactaattaaaagaaaga 490
Query: 291 ccgtggaattgaaggaaagcataaagcattatctgtgaaggttcagaggttattacaatg 350
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 491 ccgtggaattgaaagaaagcataaaacattatctgtgaaggttcagaggttattacaatg 550
Query: 351 ataacaacaatataattgagtgtagttaataaatataattttaaatataatagacttatt 410
|||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 551 gtaacaa---tgtaattgagtgtagttaataaatataattttaactataatagacttatt 607
Query: 411 tcataaatgattatgaaaataattaggtgtataattactttgctcaaaaactatcttcat 470
| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct: 608 ttataaatgattatgaaaataattaggtgtataattactttgttcaaaaattttcttcat 667
Query: 471 agtatttctctaaaacactgcatgcataggtacaaataaataaggtaaaaattttaatga 530
||||||||||||||| ||||||| ||||||||||| |||| || |||||| ||||||||
Sbjct: 668 agtatttctctaaaaaactgcatt-ataggtacaaa-aaattagttaaaaagtttaatga 725
Query: 531 aatgaaaatcatatttcatgaaatagaattatgtgat-aaagcattgaaa 579
|||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct: 726 aatgaaaatcatatgtaatgaaatagaattatgtgattaaagcattgaaa 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 977
Length adjustment: 10
Effective length of query: 570
Effective length of database: 967
Effective search space: 551190
Effective search space used: 551190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
