BAC Information

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BAC

Clone NameMSMg01-460C06
Chromosome2 (Build37)
Map Location 132,527,261 - 132,595,733
singlet/doubletdoublet
Overlap genenone
Upstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906
Downstream geneChgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C06.T7 (MSMg01no460_c06.b1)MSMg01-460C06.TJ (MSMg01no460_c06.g1)
ACCAG545568AG545569
length700703
length of high quality
(start - end)
540 (64 - 603)449 (73 - 521)
definitionCHROMAT_FILE: MSMg01no460_c06.b1 PHD_FILE: MSMg01no460_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:18 2005CHROMAT_FILE: MSMg01no460_c06.g1 PHD_FILE: MSMg01no460_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(132,527,261 - 132,527,786)(132,595,282 - 132,595,733)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTATGCGCAACATTGCGGCTTTGGAAGGCTCTCTTGGGTTGAGGG
TGGACTGGCTACAATTACTCCCCAGTTTTTATACAGTAATAGCAAGTGCC
GAGTTTGCTTCTGCTGCCCTCTTGTGGCTGCTGCCCACAGATTTCTGAGG
GCGGGTCGGGGGTGAAATGTGAGTTAAACCTTTTGTCATTCATTCTCTGC
TTTGATTAAGATGACAACCGCACCCTCCCACACCCCACCCCCTCACACAC
ACCCCACCCCTGTCATCACCCAGACAGACACAAGCACCATTTGGGTGGAA
CTCAAGACTCGGGGCACATGTGAAGCAAGAGCTCAGCCTTGAGCTACACA
CTGCACACCCAGCCCCTCTCTTTATAGAAGCTGTCTACTGGGGTAGAATT
AAACATTTTTAGAGACTCCTTTTTTGAAATGAGGTCTTAGGCTGGAACTT
GAGCAGCTAATTTGTCACTGTCCCCAATGTCAGCTGTGTTCACTATGCAT
GTGCGATGTGGTCTAAGAGCATGTTCATGGCGTTGTCCATGCATTTACCT
ATAAGGCTTAGACTTTTTCTTTGCGAAAGACCTAAGGATGTACACTTTCA
TCTGTTGATAAGATGAAGGCATTAAAAAAATCCCTACCCTCCTCTCTCTG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGCTTACTC
AAACATCAGCAGAAAAATTACATGTACGTGCAGGGTGTCAGAGTTCTGTG
AGTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCTTCACATTCCTCTTT
ATCTTTAAGGTCTTTTTTTTTTTTAAGAGTCCTTTTATGTCTTCCAGTGG
CAGGGCCACTTCCATGTACATAAACGAATTTTTTTTTAATGTGTTTCCTT
CTTGTAGATTATCACTTGTCTTTTGAGATGAAACTATCTTCAGGAGGTAG
ATAAAAATGTTTAGAGTGAAGCCTTGGAATTTCTTTTCCCATATGGATGG
TATTTTTTGTTTGTTGAGACAGTTTCTCTATGTAGCCCTGGCTGTCCTAG
AACTCACTCTGCAGACCAGGCTGTGAATGTTTTTATTTTGAAGCCAAGGT
TTCATTCTATAATCCAGGATGCCCTGGAACCAGCAATCCTTCTGCCTATA
CTTTCTTTGTGCCTGCACTACAAGTGGGGCCCACCACTTCTGGGTACATG
TGGCTTCCCCTTATTCTATCTCCCATCTTTATTTTAATCCCCCCATTTAA
CTTGGTATCTTGATTTTTGTTCCCTCCTTAATTTTAATCGGGTATTTCTT
GCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c06.b1 MSMg01no460_c06.b1 CHROMAT_FILE:
MSMg01no460_c06.b1 PHD_FILE: MSMg01no460_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:18 2005
         (540 letters)



>mm_chr2_132527044_132527986
          Length = 943

 Score =  965 bits (499), Expect = 0.0
 Identities = 519/527 (98%), Gaps = 5/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 18  aggctctcttgggttgagggtggactggctacaattactccccagtttttatacagtaat 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aggctctcttgggttgagggtggactggctacaattactccccagtttttatacagtaat 277

                                                                       
Query: 78  agcaagtgccgagtttgcttctgctgccctcttgtg---gctgctgcccacagatttctg 134
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 278 agcaagtgccgagtttgcttctgctgccctcttgtggctgctgctgcccacagatttctg 337

                                                                       
Query: 135 agggcgggtcgggg-gtgaaatgtgagttaaaccttttgtcattcattctctgctttgat 193
           ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agggccggt-ggggcgtgaaatgtgagttaaaccttttgtcattcattctctgctttgat 396

                                                                       
Query: 194 taagatgacaaccgcaccctcccacaccccaccccctcacacacaccccacccctgtcat 253
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 397 taagatgacaaccgcaccctcccacaccccaccccctcacacacaccccacccctgccat 456

                                                                       
Query: 254 cacccagacagacacaagcaccatttgggtggaactcaagactcggggcacatgtgaagc 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacccagacagacacaagcaccatttgggtggaactcaagactcggggcacatgtgaagc 516

                                                                       
Query: 314 aagagctcagccttgagctacacactgcacacccagcccctctctttatagaagctgtct 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aagagctcagccttgagctacacactgcacacccagcccctctctttatagaagctgtct 576

                                                                       
Query: 374 actggggtagaattaaacatttttagagactccttttttgaaatgaggtcttaggctgga 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 actggggtagaattaaacatttttagagactccttttttgaaatgaggtcttaggctgga 636

                                                                       
Query: 434 acttgagcagctaatttgtcactgtccccaatgtcagctgtgttcactatgcatgtgcga 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acttgagcagctaatttgtcactgtccccaatgtcagctgtgttcactatgcatgtgcga 696

                                                          
Query: 494 tgtggtctaagagcatgttcatggcgttgtccatgcatttacctata 540
           ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 697 tgtggtctaagagcatgttcatggcattgtccatgcatttacctata 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 943
Length adjustment: 10
Effective length of query: 530
Effective length of database: 933
Effective search space:   494490
Effective search space used:   494490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no460_c06.g1 MSMg01no460_c06.g1 CHROMAT_FILE:
MSMg01no460_c06.g1 PHD_FILE: MSMg01no460_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:18 2005
         (449 letters)



>mm_chr2_132595059_132595909
          Length = 851

 Score =  826 bits (427), Expect = 0.0
 Identities = 446/453 (98%), Gaps = 5/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatagcgacacactattggcttactcaaacatcagcagaaaaattacatgtacgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agcatagcgacacactattggcttactcaaacatcagcagaaaaattacatgtacgtgca 616

                                                                       
Query: 61  gggtgtcagagttctgtgagttgttgactcagttcagatagccctgttatgtcttcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gggtgtcagagttctgtgagttgttgactcagttcagatagccctgttatgtcttcacat 556

                                                                       
Query: 121 tcctctttatctttaaggtc-ttttttttttttaagagtccttttatg-tcttccagtgg 178
           |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct: 555 tcctctttatctttaaggtctttttttttttttaagagtccttttatgct-ttccagtgg 497

                                                                       
Query: 179 cagggccacttccatgtacataaacgaattttttttt--aatgtgtttccttcttgtaga 236
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 496 cagggccacttccatgtacataaacgaattttttttttaaatgtgtttccttcttgtaga 437

                                                                       
Query: 237 ttatcacttgtcttttgagatgaaactatcttcaggaggtagataaaaatgtttagagtg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttatcacttgtcttttgagatgaaactatcttcaggaggtagataaaaatgtttagagtg 377

                                                                       
Query: 297 aagccttggaatttcttttcccatatggatggtattttttgtttgttgagacagtttctc 356
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 376 aagccttggaatttcttttcccatacggatggtattttttgtttgttgagacagtttctc 317

                                                                       
Query: 357 tatgtagccctggctgtcctagaactcactctgcagaccaggctgtgaatgtttttattt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tatgtagccctggctgtcctagaactcactctgcagaccaggctgtgaatgtttttattt 257

                                            
Query: 417 tgaagccaaggtttcattctataatccaggatg 449
           |||||||||||||||| ||||||||||||||||
Sbjct: 256 tgaagccaaggtttcactctataatccaggatg 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 851
Length adjustment: 10
Effective length of query: 439
Effective length of database: 841
Effective search space:   369199
Effective search space used:   369199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)