BAC Information

Click to search

BAC

Clone NameMSMg01-460E12
Chromosome2 (Build37)
Map Location 172,356,934 - 172,357,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957
Downstream geneTcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460E12.T7 (MSMg01no460_e12.b1)MSMg01-460E12.TJ (MSMg01no460_e12.g1)
ACCAG545676AG545677
length693693
length of high quality
(start - end)
555 (65 - 619)480 (74 - 553)
definitionCHROMAT_FILE: MSMg01no460_e12.b1 PHD_FILE: MSMg01no460_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:29 2005CHROMAT_FILE: MSMg01no460_e12.g1 PHD_FILE: MSMg01no460_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATTGCCGAGGACCAGGCTAGATCTTCAGAAAAAACAGAGGAAGG
GGCCAGAGTCCAAGGCTCTGGGGCATAAACCACACCGCCACAGATGTCAC
AAACAGGTGTCCTTTATCTAGGTAGCAGTCTCAAATAGTCCAGGCTATCC
TCATACATGCTGAGTAGCCAAGGATGACCCTAAAATTCTGACCCTTCTGC
ATTCATCTCTCAAATGCTAGGATTATATACCTGGGTCACCATGCCTGGTT
GTATGCAGCTCAGACCCAGGGACAAGCAGCTTTTCTTAAACTGTGTGCTG
GCAGCTAAGCTAGTTCTTTGGACAAGATACTCTGAGCACTGATGGGCGTG
AGGTCTGGTTGGAGGGCAGAGGCATAAAAGCAATAAACCTTCAAGTCACG
AGAGTGGGGGAGGACTGGTGTCCAAACTCCATCAGGTACCTCTCTAAAGG
CCAAGGAAGGCAGGAGAGGGGAGGACTTGGTGTCTTTAGTGGTGAGAAGG
TTTCTGTTAGATCAAGATAAGAGCTCTCCCCACACAAGAGGGTCCCCCAG
GCAAACAGCTCTGCAGCCTTGCCCCTCCAGGCCAGGCAGGTAGCTGGAAA
TAATCTCTCACCAGGTGCTGAAGTGCTTGCTCTAAGACTGACN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCCGTATTCAGGACTGGGAAGACGG
CTCGATGGAAGGAAGGGCCTAAGTGTGAAGTTCCCCAGAGTTCAGGTGAA
TTCCAGGTGTGCTTGATGTCCTACCTGCTACTCCAGCCTCAAGGAGCAGA
GGCAGGAGATCTCCAGAGCAGTCTGGCTAGCCAGAGTAGCCACATCAGTG
AGCTCTGGGTTCCATTGAGAGCCCCTGTCTCACTGAATTAGGTGAAAGGG
TAAAGAGAGATGACTCTTGGGCTTTTAGACCCTCATCCTAGCTGCCTGGA
AGTCAGTATTCTGCTAGCAGCCCTCAGATGAAGATGGAGAACTCTCAGCT
CCTCATGTACCATGCCTGCCTGGACGCTGCCATGTTCCTGCCTTGATGAT
AATGGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTCAATGTTGTCT
TTATAAGACTTGCCTTGGTCATGGTTGTCTATTCACAGCTGTAAAACCCT
AAGACAATGCCCATGCATAGAGAGGGTGCTTCCCATAAGTCCCAGAGATG
TGTGTTTCCTTATTTCCCCATTGGAACAAGAAAAGTTGGGTTTCAGAAGT
TGTTTTTTACAAATTATGGATTTAATTATTGGGCGGTGGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_e12.b1 MSMg01no460_e12.b1 CHROMAT_FILE:
MSMg01no460_e12.b1 PHD_FILE: MSMg01no460_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:29 2005
         (555 letters)



>mm_chr2_172356477_172357431
          Length = 955

 Score =  948 bits (490), Expect = 0.0
 Identities = 496/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  ggcataaaccacaccgccacagatgtcacaaacaggtgtcctttatctaggtagcagtct 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 ggcataaaccacaccgccacagatgtcacaaacaggtgtcctttatctaggtagcagtct 896

                                                                       
Query: 118 caaatagtccaggctatcctcatacatgctgagtagccaaggatgaccctaaaattctga 177
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 caaatagcccaggctatcctcatacatgctgagtagccaaggatgaccctaaaattctga 836

                                                                       
Query: 178 cccttctgcattcatctctcaaatgctaggattatatacctgggtcaccatgcctggttg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 cccttctgcattcatctctcaaatgctaggattatatacctgggtcaccatgcctggttg 776

                                                                       
Query: 238 tatgcagctcagacccagggacaagcagcttttcttaaactgtgtgctggcagctaagct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tatgcagctcagacccagggacaagcagcttttcttaaactgtgtgctggcagctaagct 716

                                                                       
Query: 298 agttctttggacaagatactctgagcactgatgggcgtgaggtctggttggagggcagag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agttctttggacaagatactctgagcactgatgggcgtgaggtctggttggagggcagag 656

                                                                       
Query: 358 gcataaaagcaataaaccttcaagtcacgagagtgggggaggactggtgtccaaactcca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gcataaaagcaataaaccttcaagtcacgagagtgggggaggactggtgtccaaactcca 596

                                                                       
Query: 418 tcaggtacctctctaaaggccaaggaaggcaggagaggggaggacttggtgtctttagtg 477
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcaggtacctctctaaaggacaaggaaggcaggagaggggaggacttggtgtctttagtg 536

                                                                       
Query: 478 gtgagaaggtttctgttagatcaagataagagctctccccacacaagagggtcccccagg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtgagaaggtttctgttagatcaagataagagctctccccacacaagagggtcccccagg 476

                             
Query: 538 caaacagctctgcagcct 555
           ||||||||||||||||||
Sbjct: 475 caaacagctctgcagcct 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)