BAC Information

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BAC

Clone NameMSMg01-460F18
Chromosome2 (Build37)
Map Location 50,515,756 - 50,516,160
singlet/doubletsinglet
Overlap genenone
Upstream geneKif5c, 2310010M24Rik, Lypd6, 2010311D03Rik, LOC666781
Downstream geneLOC227885, Rnd3, LOC666802, LOC666810, LOC100041614, Tas2r134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460F18.T7 (MSMg01no460_f18.b1)MSMg01-460F18.TJ (MSMg01no460_f18.g1)
ACCAG545735AG545736
length770765
length of high quality
(start - end)		427 (38 - 464)405 (69 - 473)
definitionCHROMAT_FILE: MSMg01no460_f18.b1 PHD_FILE: MSMg01no460_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:34 2005CHROMAT_FILE: MSMg01no460_f18.g1 PHD_FILE: MSMg01no460_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTACCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGT
CTACCTTCTTGAGTTCTTTATATATATTGGATACTAGTCCTCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTT
ATTGACAGTGTCTTTTGCTTACAGAAGCTTTGCAGTTTCATGAGGTCCCA
TTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGA
ATTTTTCTCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTATATGTTGAGTTCCTTGATCCACTTAGG
TGTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTCTAC
ATGATAACCACCAGTTTTTCCAGCACCGTTTGTTGAAAATGCTGGCTTTT
TTCCACTGGAAGGTTTTATCTCCCTTGGTCAAAAACAAGGGGACATAAGT
GGTGGTGGTTTCTTTTTTTGACCTTCCATCCCATTTCAATGCGTCAACTT
GCTTGGTGGTCTTTTCTCCACCCCTTTGTGTTTTTTTTTTTTTTTTTGCT
CCTTTCCTCCGTTTTTACTCTCCCTCGTTTCTTCCTTTTTTTATAATCTT
CTTTTATTTTTTCCTGTATTCACCTTTCTTTATTCTATATCATTTTTCTT
CTTTTCTCCTCAGACATTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACATCATGTGAATTCACTTTTTCTGAAGTGAT
TTATTCACGTTGCAGATCATTCCTTTGTTTGGCTGTTTAATTTTCTTTGG
AACAAATATGTTATGTTTAGTTACTCTCAACTATATAATTAAATTTTAAT
TATTTCTAATTTAGTACTACGGATGTATATATGTCTTTTTGTTGGCCTAC
CTGTTTTCCATCACGAACCTTGTAAATACTGGGACTCACTACAGCACAAC
CTTGGACAAGAGCTTCCCTGGGTTGTGAAGACTAACACTCAAGGAAACTG
TTCAAAGCTTTCACCAAAGTTTATTTGAAAAGAATGACAATAGCCTTTAT
AAGGGGATGAAGCCAATCCTTACACAAACGTGAACAGGTCCTTGAAAAGG
GAAGTTTCACCATCTTGTAATAGAGGATGCACTACTATTCAGGCCAGACC
CTCTCTCAGGTTCCTTTGAAATGAAGCATCATCAGGTACAGCACACAGCT
GGACAAGGAAGTTTATTCTGCTGGTCCACCCCCATTGGGATTGTCCTTAT
TAAACCCTGGTTTAGTCTTCTTATCCTCTTCTTGGAAAAAATTAAGGACC
TCCCCNCTCTAAAAAGTTTTATATCCCCAATTTCTCTATGGCTTTACCCG
GGACTCCCAATATTGTGTTTTTCCAATAATAATTCCCGGTTAGCCCCACC
TCCTTTTCCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_f18.g1 MSMg01no460_f18.g1 CHROMAT_FILE:
MSMg01no460_f18.g1 PHD_FILE: MSMg01no460_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:35 2005
         (405 letters)



>mm_chr2_50515411_50516215
          Length = 805

 Score =  783 bits (405), Expect = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatcatgtgaattcactttttctgaagtgatttattcacgttgcagatcattcctttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 acatcatgtgaattcactttttctgaagtgatttattcacgttgcagatcattcctttgt 691

                                                                       
Query: 61  ttggctgtttaattttctttggaacaaatatgttatgtttagttactctcaactatataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttggctgtttaattttctttggaacaaatatgttatgtttagttactctcaactatataa 631

                                                                       
Query: 121 ttaaattttaattatttctaatttagtactacggatgtatatatgtctttttgttggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttaaattttaattatttctaatttagtactacggatgtatatatgtctttttgttggcct 571

                                                                       
Query: 181 acctgttttccatcacgaaccttgtaaatactgggactcactacagcacaaccttggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 acctgttttccatcacgaaccttgtaaatactgggactcactacagcacaaccttggaca 511

                                                                       
Query: 241 agagcttccctgggttgtgaagactaacactcaaggaaactgttcaaagctttcaccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agagcttccctgggttgtgaagactaacactcaaggaaactgttcaaagctttcaccaaa 451

                                                                       
Query: 301 gtttatttgaaaagaatgacaatagcctttataaggggatgaagccaatccttacacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtttatttgaaaagaatgacaatagcctttataaggggatgaagccaatccttacacaaa 391

                                                        
Query: 361 cgtgaacaggtccttgaaaagggaagtttcaccatcttgtaatag 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cgtgaacaggtccttgaaaagggaagtttcaccatcttgtaatag 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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