BAC Information

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BAC

Clone NameMSMg01-460O08
Chromosome2 (Build37)
Map Location 136,680,933 - 136,681,176
singlet/doubletsinglet
Overlap genenone
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911
Downstream geneMkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460O08.T7 (MSMg01no460_o08.b1)MSMg01-460O08.TJ (MSMg01no460_o08.g1)
ACCAG546145AG546146
length707801
length of high quality
(start - end)
242 (65 - 306)54 (71 - 124)
definitionCHROMAT_FILE: MSMg01no460_o08.b1 PHD_FILE: MSMg01no460_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:17 2005CHROMAT_FILE: MSMg01no460_o08.g1 PHD_FILE: MSMg01no460_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACCAAGAGGATCCGCGGAA
TTCGCATTCTCCCACTCAAGCTGCCCAAATAGAGACAGCGCTGAAAACAA
TGTTTCTCTTAACTGCAATGCCAAGGCTATCAGACTGCATACAATGGCTA
TTTATCTCACTTACTGAGAATTTTTGTGTGCGTGTCTCACTGTTTTGATT
TAAATGCATTTGCTATCGAATGCGCTTTTAGGTCTCCCCTGTACTTGGAA
TGTGACATGCGATGCGTGGGCTTCATTACCAAATGACAATCCAGAATTTT
CACTTCTTTTTTTCACCTGGGACCATGGGGCTGTAATCAACAATTCTTCT
TCAAGGGTAGAGATGAATTTGTTCAGCTGCTGGAGGAATCTGGGTTAAAT
TTAAGCAGCATTCTGATGGTATAATGAGGTATGCCAGACTAGCACAGGGT
AAAACGGGTGGTTTAGATCCTAGGGTAATGGCTGGCTCGTGTTGCCGCAG
GTCATCATGCCACAATTTATACAACATAAGCCATATGAACACTCAACACC
TATTTGGTACCATAATGCCTAAAACCAGTGACCCCTTCTTGACTCTTGCT
CTCTTTACTATGGCTTCCTCTGCTTATATCTTTATATCTTGTCTTCATTG
TCCTGTTTTCCTCTCACTTATCTTGCAGTCTTGTTTCACTTGTCCTATAT
TCTATCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGGGTAGCTGCCAAGTAGTTTTGTGCCA
AGGGGGGGGTGGCGAGGGGAGTTAATGCCCTTTTTGTGGTCCCCCTACCC
ATTTTTATTAGAGCCGGGAACCTCCCCTTGCTGCACGCGACATTTCGTAG
CCCCCTTAGATAGTACCCCGAGTGACAGTCCTAGGCCTTTATTTTTTTTG
CACAACCGACATGCCACCAGAATTCCTTATTGATTTACTCCTACACCCCA
CCTGAGACGGGCAATTTTTATAGTTTTACCGCCCAGGTTCCACCCCACCC
CACTCCACATCTCCTTCTTCCCTCCCCCTCCATCAACTATTCACTGCCCC
TCTTCCTGCTCCCCTCTATCGCGGATCACCCCCCGACTCTCCCTATCCTC
TCTTTCCTTCCCCGTCCACACCACCCACCCCCCCAACCATTTTGTATTAT
CCCCCGCTCCCCCCCTCCCTGTTCTCCACCCAACAACGCTCTCTCCTTTT
CCTTTATCCCCGCTCCGTCCTTCCTCATTTTATCCTCCGCCCCCCGGCTT
TCCTACTTACCCCCTTCTCCCTCCCCCCACAATTCCCCGTCCTTTACCCT
TTTCTCTTTCACCCCACCTCCTCCCCCACTCCACACCTCCCTCCTTTACT
CCCCTCTTTTATTACCCCCTTTTTTACTCTTTATCCATTCCTCCTTTCCC
CTCTACACCCCCCCCCCCCTCCCTCTCTACTTTTTCCCCACACTCATTAC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_o08.b1 MSMg01no460_o08.b1 CHROMAT_FILE:
MSMg01no460_o08.b1 PHD_FILE: MSMg01no460_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:17 2005
         (242 letters)



>mm_chr2_136680733_136681376
          Length = 644

 Score =  408 bits (211), Expect = e-118
 Identities = 236/245 (96%), Gaps = 4/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaagctgcccaaatagagacagcgctgaaaacaatgtttctcttaactgcaatgccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaagctgcccaaatagagacagcgctgaaaacaatgtttctcttaactgcaatgccaa 260

                                                                       
Query: 61  ggctatcagactgcatacaatggctatttatctcacttactgagaatttttgtgtg--cg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 261 ggctatcagactgcatacaatggctatttatctcacttactgagaatttttgtgtgtgcg 320

                                                                       
Query: 119 tgtctcactgttttgatttaaatgcatttgctatcgaat-gcgcttttaggtctcccctg 177
           ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct: 321 tgtctcactgttttgatttaaatgcatttgctatc-aattgcggttttaggtctcccctg 379

                                                                       
Query: 178 tacttggaatgtgacatgcgatgcgtgggcttcattaccaaatgacaatccagaattttc 237
            ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 380 gacttggaatgtgatatgcgatgcacgggcttcattaccaaatgacaatccagaattttc 439

                
Query: 238 acttc 242
           |||||
Sbjct: 440 acttc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 644
Length adjustment: 9
Effective length of query: 233
Effective length of database: 635
Effective search space:   147955
Effective search space used:   147955
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)