BAC Information

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BAC

Clone NameMSMg01-461H07
Chromosome2 (Build37)
Map Location 171,526,633 - 171,526,876
singlet/doubletsinglet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H07.T7 (MSMg01no461_h07.b1)MSMg01-461H07.TJ (MSMg01no461_h07.g1)
ACCAG546574AG546575
length748767
length of high quality
(start - end)
246 (74 - 319)302 (77 - 378)
definitionCHROMAT_FILE: MSMg01no461_h07.b1 PHD_FILE: MSMg01no461_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:03 2005CHROMAT_FILE: MSMg01no461_h07.g1 PHD_FILE: MSMg01no461_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGAAGCGC
GGAATTCTTATATTTTCCCAGATTTAAGAGGATCCCTTTGAGTGTGAATC
CAATGCACCCATGCATTGCATGTGGCACAGATTGCCTCTGTCCCTCTCCT
GTGACTCAGATAGAAGCTGGTAATCTATCACAGCCCTGTCCCTTCAACGA
TGCTCCTATAACCAGTCTTGAAATCTCTCTTAATTCAGGATTTTTTGTGC
TAGGTATAGTAGGTCACATCTATAAGTCCAGGCTCAAAGACTGAGGTGGG
AGGAGTACTGTGCCTTTGTTTTTTGTCTGGGCTACAAAGCAAGATTGTAT
CAAACAAACTAATGAACAGGCAAGAGTTCCTAGAGACTCCTGTGCACCAT
GTGGTGTTGTTACAACTTAATACTGTCAGTCTAGAGTCAGCTGCTCACTT
AAACAAAGCTACATGCTTCATTCACTTTCTAATACTTGCTTACTTTATAA
CTGCGCATGGTGGCACATCCCTTTGATACCTCAACTTGGTAATATAGGCC
AATTTAAATCTACAATTATTTCTATGTATTTAAGACCAACCCTGGTCTTA
CTAAAATATTTCCCGGCAATCCTATGTTCTTCCATGCTAAAATATGAATA
CTCTGTCTCCAAAATAAAATTCTCTTATTTCTTAATCCTCTCTTTGTAAA
TAAAATGTTATTGTATCTTTCAATTTCATTTTTCCCTTATATTCTTTG
CCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGA
ATTTTATTGAGGATTTTTGTTTTTATATTCATAAGAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAG
TGGCTTCATAATATGATTCGCCTAGAGTACCTTCCACTTCTATTTTGTGA
ACTATCTTGTGCATAACTTTAATTACATCTTCTTCGTACGTCTGATACAA
CTCTGCACTAAATCCTTCTGTTTCCGGTTTTTTTTTTTGGTGCCAATATT
TTTTATACATTGCTTTCTTTTTCTTTTCCCCGATCTTTTTTTTTCTCATT
TCTGTTCTCCTTTAATTTGCTTTTTTTTTCTGCTTTTTTTTTTATTATGC
TCTCTCCTTTTTTTTTTTTTTTCTCTCTCCCACTCTTTTACACATTACTC
CTTTTTTCTATTTCTCCTTTTTCCCATCTATATTGCTTTTTCTTTCCCTC
CTTACCTTCTTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h07.b1 MSMg01no461_h07.b1 CHROMAT_FILE:
MSMg01no461_h07.b1 PHD_FILE: MSMg01no461_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:03 2005
         (246 letters)



>mm_chr2_171526433_171527077
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagaggatccctttgagtgtgaatccaatgcacccatgcattgcatgtggcacagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttaagaggatccctttgagtgtgaatccaatgcacccatgcattgcatgaggcacagatt 260

                                                                       
Query: 61  gcctctgtccctctcctgtgactcagatagaagctggtaatctatcacagccctgtccct 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gcctctgtccctctcctgtgactcagatagatgctggtaatctatcacagccctgtccct 320

                                                                       
Query: 121 tcaacgatgctcctataaccagtcttgaaatctctcttaattcaggattttttgtgctag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tcaacgatgctcctataaccagtcttgaaatctctcttaattcaggattttt-gtgctag 379

                                                                       
Query: 181 gtatagtaggtcacatctataagtccaggctcaaagactgaggtgggaggagtactgtgc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 gtatagtaggtcacatctataagtccaggctcaaggactgaggtgggaggagtactgtgc 439

                
Query: 241 ctttg 245
           |||||
Sbjct: 440 ctttg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space:   150732
Effective search space used:   150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)