BAC Information

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BAC

Clone NameMSMg01-461L02
Chromosome2 (Build37)
Map Location 24,042,480 - 24,214,494
singlet/doubletdoublet
Overlap geneIl1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn
Upstream geneYme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253
Downstream genePsd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461L02.T7 (MSMg01no461_l02.b1)MSMg01-461L02.TJ (MSMg01no461_l02.g1)
ACCAG546756AG546757
length762745
length of high quality
(start - end)
245 (52 - 296)293 (82 - 374)
definitionCHROMAT_FILE: MSMg01no461_l02.b1 PHD_FILE: MSMg01no461_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:23 2005CHROMAT_FILE: MSMg01no461_l02.g1 PHD_FILE: MSMg01no461_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,042,480 - 24,042,720)(24,214,205 - 24,214,494)
sequence
TTCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCCTGTTCTCCCATCTCCAATGCCTTAAGAATTTTTTT
CCCCAAGAGGTAGTTTAGCTTTTCTGACAAGAGCATCATGTCTGGCTATG
CATTTCAACTCTCTGCCCTGATTGAGACCCTGAGAAACCAGGGTCTTAGA
AAGTGTTGCAAATGTTGTTGAGGTTTATCTTCTTCCTGCTGTCTTCTCCT
TCAGGCACCAGAACAAGATCACGATGGAAAACAATGAAAAAAAAAACATT
GTGTATGGAAGTGATGTTGAGATGGAACTTTATAGAGCTGGGCTATTTGC
ATCTTCAGCTATGTTTTCTATCCACCCATTTTCTACACTCATCTCAGGCA
TGGCTCTTATCTCACTATATGGCGCCCCTATACCACTACGCCTTTACTTT
TTGTAGGGGGGAGACCATCATCCTTCCCTCGTACTTTCTGCGTCTCCCTT
ATATATTATTTGTTGCACCTGTTTTTTACTCTCGTTTTTCTGCTTTGCCC
CTTTAACTCCTAAATCCACCCCAACCTATTTTTTGTTCACTTTTAGACCT
TTCCATTTCATTAGTCTCTTTTTTGCCATTACTCCTCCATTCTATTTTTT
TCCTACTCGCACTACTATACTTCTCCCTTCTTTCTCTTATTGACTCCTTT
GCCCCTTCTTTACTACTTCTTTCCCTCCTAGTCTCCTTTTCACCTCCCTC
CTCTTTTATTCN
TCTCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATATGTGGCATAACAT
ATACAGCCTAATTTGAATGCAAATATCCTCACTGTTGTAAGGGTGTCAAC
CAATTAAAGGAGAAGGGGCCTTCTAATTACTCAAACAAAATAGATGCCAG
ATGGAACTACTCCTTGGTCTCTACAGTCACTTACATTTTCTGTATGTGAC
TTTTGGTTGGCTATAAATGGTAAGTTATTTCTCCATTGGTAAAATGAACC
AGTTCAAGCCAGATTAAATTATGTATAATTGTAGATTTTTCTGGGAAGCT
ACTCTCAGGAGAGCAGGGTCTTACGCCCCAAGGAAGGAGGCCAGGGAAGT
TGCCCTGTAGGGAAAGAGACATCGGAGAGGGAGGAAGGCAAATATAGAAA
GACTTCTTGCCGAGAGAGGGATAGAATATAGTAGAAACGTCGTCTTACAG
ACCAAATTGCTTGAATATTTCTGCAAAAATCCGCGGCCTCAATGTGATCC
TTCTTCCTTCTCTCCTTTTTTCTTTCTTCCCCCCCGTATTTTTTCCCATT
ATCCCTATTTTTTCTCTTTTTTCTCCTTCTCCTATCCCTTTCCATGTACT
CTTTCCTCCTCCAGCCATTTTCCATCCTTCCTCCAACGCCCATTTTTCCT
TTCACTATTTTTCTTCCGTTTTTATCTTCCATACTAATTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_l02.b1 MSMg01no461_l02.b1 CHROMAT_FILE:
MSMg01no461_l02.b1 PHD_FILE: MSMg01no461_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:23 2005
         (245 letters)



>mm_chr2_24042276_24042920
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcctgttctcccatctccaatgccttaagaatttttttccccaagaggtagtt 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcctgctcttccatctccaatgccttaagaatttttttccccaagaggtagtt 264

                                                                       
Query: 65  tagcttttctgacaagagcatcatgtctggctatgcatttcaactctctgccctgattga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagcttttctgacaagagcatcatgtctggctatgcatttcaactctctgccctgattga 324

                                                                       
Query: 125 gaccctgagaaaccagggtcttagaaagtgttgcaaatgttgttgaggtttatcttcttc 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 gaccctgagaaaccagggtcttagaaagtgttgcaaatgttgctgaggtttatcttcttc 384

                                                                       
Query: 185 ctgctgtcttctccttcaggcaccagaacaagatcacgatggaaaacaatgaaaaaaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgctgtcttctccttcaggcaccagaacaagatcacgatggaaaacaatgaaaaaaaaa 444

            
Query: 245 a 245
           |
Sbjct: 445 a 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no461_l02.g1 MSMg01no461_l02.g1 CHROMAT_FILE:
MSMg01no461_l02.g1 PHD_FILE: MSMg01no461_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:23 2005
         (293 letters)



>mm_chr2_24214109_24214801
          Length = 693

 Score =  484 bits (250), Expect = e-141
 Identities = 280/290 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatatgtggcataacatatacagcctaatttgaatgcaaatatcctcactgttgtaag 60
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 386 tctatatgtggcataacatatacagcctaacttgaatgcaaatagcctcactgttgtaag 327

                                                                       
Query: 61  ggtgtcaaccaattaaaggagaaggggccttctaattactcaaacaaaatagatgccaga 120
           ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 326 ggtgtcaaccaatgaaaggggaaggggccttctaattgctcaaacaaaatagatgccaga 267

                                                                       
Query: 121 tggaactactccttggtctctacagtcacttacattttctgtatgtgacttttggttggc 180
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 266 tggaactactccttggtctctacagtcacttacattttgtgcatgtgacttttggttggc 207

                                                                       
Query: 181 tataaatggtaagttatttctccattggtaaaatgaaccagttcaagccagattaaatta 240
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 206 tataaatggtaagttatttctccatcggtagaatgaaccagttcaagccagattaaatta 147

                                                             
Query: 241 tgtataattgtagatttttctgggaagctactctcaggagagcagggtct 290
           ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgtataaatgtagatttttctgggaagctactctcaggagagcagggtct 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)