BAC Information

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BAC

Clone NameMSMg01-462C22
Chromosome2 (Build37)
Map Location 178,195,756 - 178,196,113
singlet/doubletsinglet
Overlap geneCdh26
Upstream geneLOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462C22.T7 (MSMg01no462_c22.b1)MSMg01-462C22.TJ (MSMg01no462_c22.g1)
ACCAG547130AG547131
length760763
length of high quality
(start - end)		508 (51 - 558)461 (81 - 541)
definitionCHROMAT_FILE: MSMg01no462_c22.b1 PHD_FILE: MSMg01no462_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:06 2005CHROMAT_FILE: MSMg01no462_c22.g1 PHD_FILE: MSMg01no462_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTCTAGGTAACATTTCTGTTATATTGATGTGCTTTTACT
GTTATTATTAAACATATATAACAATCACTTAGTAATAGCACACCCCTTTG
GAGCAGATCTCTACAGATCCACGAAGATGTACTGTCTTGCTGTGATGCTA
TATAGACAAATAGATGACTTCTTAAGTCTTAATGATGATCCTATAAGAAT
TCCTAAAATTATATCTGTGATTATTAAGCTCTTTTATAGTGGAACTGCTA
TTTGGTCCTTTTCTGACAGTCAAGCTGCAATGAGAACTCTGCCAGTCTCC
CAAGTGTCACCAGCTATTTTCTCCTACTCAGAACACATTCCAAGAGGTTG
TAAAACAATTCACCAAAGGTCATAAAAAAGGGAACTAATGATTTATTATA
GGTGTTAGGACAGAAGATAAAATATTGACTGGGTTTATCTATACAAAACT
TCACTAATAACTTATAGTTTCAACTTACAATGAACCAGTGGCTGTGACAG
GTGATGAATGTTTAGCCAGATAATTACTCCAAATGGATATGCATGTAAAC
ATTGTCTGTTGTAAACTTCTATTTTCATTGAAGATTTGAGTTAGTGGGCG
AACTTGTGATGAGCTTTTTTACTGTGACCCCGGATTCTGAAAGAAGGGGA
GGGCCTGGGGGACAAAAAAAGTAAAGGCCTAAAATAAATGATTTCTTCCC
CTAAGAAAAA

NNAACCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAATAGAACATGATGAG
GAAGATGAAAGAGCCAAAGGCTTGGAGGGCCCAGGAGGGTACAGGGCATT
TACTGGGTCATCAAAGGAAGCCCCTCTCAGAATCAATGCTTGTGATTGAT
CCTGTTGTGATTGGCACATACACTTGCATGAGCCCCCAAAGACAACTTAG
GAGTCAGTTCTCTCCTTCTATCTGTGTTCCACGGGTTTCGGGATGGCAGC
AAGTCCTTTTGCCCACTGAGTCATCCTAAAGGCTCCAACCTTGCTTTTTG
AGACAGGTGTCCCACTAAGGCCCATGCATGGCTCACCAATTAGGCAAAGA
TGGCTGCCAACGGCCCCATGCATCCTCCTGCCTGTCCTCAGTGGATATAT
GATTATCATTCTCCAGTCCTCACACTTGGACAGGGGTTACTTTACAGACT
GGACTCATTAAAAAGAACACGATGCCTGGAGACTCTGTTAAGTCCCCAGG
CAGAGTCCTTGGTTCCAGTTTAGGTCACTCTGGATAATTGTATGTATCTT
GCTCATGACCCAGATATAGCATCTAAACCCAGGAATTTGGGGACCCCTTT
GTGAGAGGCCTTTGAACTCAGGTCCCATAAGATTTAAACGGGTTTTTTAT
AAATTGGGTGCCACTGGTTACTGTTCCTTCTTCCCCCACTGTGCTTTAAT
AATTTCCCGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_c22.g1 MSMg01no462_c22.g1 CHROMAT_FILE:
MSMg01no462_c22.g1 PHD_FILE: MSMg01no462_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:06 2005
         (461 letters)



>mm_chr2_178195756_178196616
          Length = 861

 Score =  692 bits (358), Expect = 0.0
 Identities = 358/358 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaatagaacatgatgaggaagatgaaagagccaaaggcttggagggcccaggagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attaaatagaacatgatgaggaagatgaaagagccaaaggcttggagggcccaggagggt 299

                                                                       
Query: 61  acagggcatttactgggtcatcaaaggaagcccctctcagaatcaatgcttgtgattgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acagggcatttactgggtcatcaaaggaagcccctctcagaatcaatgcttgtgattgat 239

                                                                       
Query: 121 cctgttgtgattggcacatacacttgcatgagcccccaaagacaacttaggagtcagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cctgttgtgattggcacatacacttgcatgagcccccaaagacaacttaggagtcagttc 179

                                                                       
Query: 181 tctccttctatctgtgttccacgggtttcgggatggcagcaagtccttttgcccactgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tctccttctatctgtgttccacgggtttcgggatggcagcaagtccttttgcccactgag 119

                                                                       
Query: 241 tcatcctaaaggctccaaccttgctttttgagacaggtgtcccactaaggcccatgcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tcatcctaaaggctccaaccttgctttttgagacaggtgtcccactaaggcccatgcatg 59

                                                                     
Query: 301 gctcaccaattaggcaaagatggctgccaacggccccatgcatcctcctgcctgtcct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  gctcaccaattaggcaaagatggctgccaacggccccatgcatcctcctgcctgtcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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