Query= MSMg01no462_e08.b1 MSMg01no462_e08.b1 CHROMAT_FILE:
MSMg01no462_e08.b1 PHD_FILE: MSMg01no462_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:14 2005
(496 letters)
>mm_chr2_130251696_130252593
Length = 898
Score = 835 bits (432), Expect = 0.0
Identities = 480/504 (95%), Gaps = 17/504 (3%)
Strand = Plus / Minus
Query: 1 actaggcctcaaactcagagatccacctgcctctgctaggattaaaggcacgtaccacca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 688 actaggcctcaaactcagagatccacctgcctctgctaggattaaaggcatgtac----- 634
Query: 61 ctttcagaacccaaa--ctctgttccttagcttcctcattactaagttggtatgaatcat 118
||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 633 ctttcagaacccagactctctgttacttagcttcctcattactaagttggtatgaatcat 574
Query: 119 gatttagttctatatggtggtgataattaagaaactatacataagaacttagcataatat 178
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 573 gatttagttttatatggtggtgataattaagaaactatacataagtacttagcataatat 514
Query: 179 ccagtatataaggaagtcatttttgttagcaacttaggacatacatatcagtcccaggag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ccagtatataaggaagtcatttttgttagcaacttaggacatacatatcagtcccaggag 454
Query: 239 gcgtaacacttcta----ttttcttcttgagtccagcacttctgtgactcactcacatct 294
| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtgtaacacttctaggcc----cttcttgagtccagcacttctgtgactcactcacatct 398
Query: 295 tctgaagcattacctatctacccatgaagctgactctccatagagtaaacaggaggagct 354
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 397 tctgaagcattacctatctacccatgaagctgactctccatagagtaaacaagaggagct 338
Query: 355 ctgtcgtaatgtggtcatcttccttatgctctgattttaaaagtctgggtaagcaacagg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgtcgtaatgtggtcatcttccttatgctctgattttaaaagtctgggtaagcaacagg 278
Query: 415 tatttttacaatagctaatattttatatttattattttttagccttttaaatatgtattt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tatttttacaatagctaatattttatatttattattttttagccttttaaatatgtattt 218
Query: 475 ggggac--agtctcatcttgccaa 496
|||||| ||||||||||||||||
Sbjct: 217 ggggacagagtctcatcttgccaa 194
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space: 431568
Effective search space used: 431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_e08.g1 MSMg01no462_e08.g1 CHROMAT_FILE:
MSMg01no462_e08.g1 PHD_FILE: MSMg01no462_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:14 2005
(460 letters)
>mm_chr2_130094067_130094927
Length = 861
Score = 884 bits (457), Expect = 0.0
Identities = 460/461 (99%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 1 ctacagagagaagtgacagggctttttgaaccctggggctagaacaatgttattctgct- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacagagagaagtgacagggctttttgaaccctggggctagaacaatgttattctgctg 260
Query: 60 cattctctacctagacacaatgggtggacacagactacatctcccagtggcaggaacacc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctctacctagacacaatgggtggacacagactacatctcccagtggcaggaacacc 320
Query: 120 aagaactaggagccagtgttcatccatcacaaatgagttttgatgggcagataaaagtat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaactaggagccagtgttcatccatcacaaatgagttttgatgggcagataaaagtat 380
Query: 180 ttgtctcttacattaaaagatacatacttatacacagggcctcatcttgttcaatctgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtctcttacattaaaagatacatacttatacacagggcctcatcttgttcaatctgag 440
Query: 240 cctgcaacactgcccacccctcagggcttaggaaagaggtattaactttgggtcctgata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcaacactgcccacccctcagggcttaggaaagaggtattaactttgggtcctgata 500
Query: 300 tgtctatgggatgagtcccttagcagaggcctctctttatttgactggtgggttgggagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctatgggatgagtcccttagcagaggcctctctttatttgactggtgggttgggagt 560
Query: 360 aaggagggcttttgtaaaccaagagtcctggggctcaaaaagactggtgcagaatgaggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggagggcttttgtaaaccaagagtcctggggctcaaaaagactggtgcagaatgaggc 620
Query: 420 aggccttccttgctcccatcacccttaaggaacccaatcac 460
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggccttccttgctcccatcacccttaaggaacccaatcac 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
