Query= MSMg01no462_m01.b1 MSMg01no462_m01.b1 CHROMAT_FILE:
MSMg01no462_m01.b1 PHD_FILE: MSMg01no462_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:52 2005
(674 letters)
>mm_chr2_137298613_137299686
Length = 1074
Score = 1259 bits (651), Expect = 0.0
Identities = 666/671 (99%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 5 ggaattcattgacaatgactacatttgtcagaagtttttttaaaaatatacccatgtacg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcattgacaatgactacatttgtcagaagtttttttaaaaatatacccatgtacg 264
Query: 65 taattaccaaatttaaatgtccaaacctctctttattgaatattgccttcatgaggagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattaccaaatttaaatgtccaaacctctctttattgaatattgccttcatgaggagag 324
Query: 125 catatgcatacaatgaatagcaagtgctcggctaacgcctctttttaactgacattttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catatgcatacaatgaatagcaagtgctcggctaacgcctctttttaactgacattttaa 384
Query: 185 aatcgttgcttggtatccttaggaaaagaacatgctttaagtacctaacatttaagctct 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 aatcgttgcttggtatccttaggaaaagaacacgctttaagtacctaacatttaagctct 444
Query: 245 tattattgaaaaagctttccctttttttccaattataattaatgttgataagtgtctttc 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 tattattgaaaaagctttccctttttt-ccaattataattaatgttgataagtgtctttc 503
Query: 305 aaatatattaggtaaaatatggtttagtctaagttacttcttttttcattctttctgtat 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaatattaggtaaaatatggtttagtctaagttacttcttttttcattctttctgtat 563
Query: 365 tttttccattatttcttatgccactatgtctcattatttctctatttctattttattact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttttccattatttcttatgccactatgtctcattatttctctatttctattttattact 623
Query: 425 atcagaaaatatatgataattttaatgaactacttccttatttggcagtaatttaatttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcagaaaatatatgataattttaatgaactacttccttatttggcagtaatttaatttt 683
Query: 485 caccataaaacgagattatatatttgttagatttttt-cctcttgcttatttgatgccca 543
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 caccataaaacgagattatatatttgttagatttttttcctcttgcttatttgatgccca 743
Query: 544 gtcttgtgttttggtgtgctatactccacatcagttacacacagaacttcaacaatgcct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtcttgtgttttggtgtgctatactccacatcagttacacacagaacttcaacaatgcct 803
Query: 604 tccctttctgcttctgaacatgtcctttaccaacaattctactcaatcttccacttaaca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 tccctttctgcttctgaacatgtcctttaccaacaattctactcaatcttccactaaaca 863
Query: 664 agcaagctgaa 674
|||||||||||
Sbjct: 864 agcaagctgaa 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_m01.g1 MSMg01no462_m01.g1 CHROMAT_FILE:
MSMg01no462_m01.g1 PHD_FILE: MSMg01no462_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:52 2005
(246 letters)
>mm_chr2_137484920_137485565
Length = 646
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Minus
Query: 1 ataagacttgtagcatctgtggggaggtgaagcagggtggggattggggatagcttttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ataagacttgtagcatctgtggggaggtgaagcagggtggggattggggatagcttttgc 292
Query: 61 tatctggagattcagtttttccttctagttgtcactgagtgaaataaggttgggttaagg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatctggagattcagtttctccttctagttgtcactgagtgaaataaggttgggttaagg 232
Query: 121 gtactggaaagacttctaccagttagaaaatataaaataaaataaaataaattaaccatc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 231 gtactggaaagacttctaccagttagaaaatataaaataaaataaaataaattaaccacc 172
Query: 181 tgaaaagataggaactaagttctgctgagcccttgtcttgttccacaactttattacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tgaaaagataggaactaagttctgctgagcccttgtcttgttccacaactttattacatc 112
Query: 241 gtc 243
|||
Sbjct: 111 gtc 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
