TTTTTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAAAATACCATCACCTAGGCCAAGAACTTAATAATAA
CAATACAAACTGGCATATCAATGTGGATGCTGAAGCTCCACACCTGGATG
AATACTACAGACATCTAATGACTTCCAAGAGAAAAACAAATATGTATGAA
CAATGCTAAATGGATTCAGGTTATAATTGTGTACACACACACACACACAC
ACACACACACACACACACAAGTCTAACAATAAAAATTAAAGAAAAATTAA
GATATTACATAAAAATAGAAGGTAGAAGGTGTTGATATAGATGGAGAATA
ATGATAATAGGAATAGGATATTATTATAGAGGACTGAAGATGATAAAAAT
AATATTTTATATGTATATGAAATGTCATAACTAAACATGTCATTCTAATA
CACAATAACAATAAAAGCAATAAAAACTACACATATACTCATATGATCAA
TCAATGATAAAGATTATTTGTGGTTGCTGTATGGAGGCATATAGATCACA
TATTAATTTTGAACAAAATGTGGACGATGATATTCCACACCCTAAGAAGC
TCTTGACGGAATTTTCTTATTTCCCGACTAAAGCCCAGCAAGATCCGGAA
CTTCCTCCTTCAATCCTTAATAATTTTTTTTTTAAGGGATGGCCCCCTCT
CTTATACTGTTGGCAAACCCTCTCCTGTACTTCATAATAAACATTG

NNNCCGATGATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAACTGAGGAATCTCGAATGGC
TAAGAAACACCTAAAGACATGTTCAAAGTCCTTAGTGATCAGAGAAATGC
AAATCAAAATGACCCTGATATTCCACCTTACACCATTCAGAATGGCTAAG
ATCAAAACCTCAGGTGACAACACATGTTGGAGAGGATGTGGGTGGAGAAA
GAGGAACACTCCTCCATTGCTGATGAGATTGCAAACTGGTACAACCAACT
TGGAAATCAATCTAGAGGTTCCTTAGAAAATTGGAAATAGATCTATCTGA
AGACCCAGCTATATCATTCTTGGGAATATATCCAAAGGATGCCCCACCAT
GCCACAGGGGCACGTGTTCCACTATAGTCGTAGTGGCCTTATTTGTGATA
ACCAGCAGCTGGTAACAACCTAGATGTCCCACAACAGAAGAATGGATACA
GAAAATGTGGTTCATTTACACAATGGAATACTACTCAGCTATTAAGAACG
AGGATATCCTTGAGTTTTCAGGCGAATGGATGGATCTGGAAAATATCATC
CTGAGTGAGGTAACGCAGACCAAAATGACATGGATGGGATGTACTCCCCA
ATAAAGGGAAATTAAGGGAAAGGAGGGCCCCCCCTCCCCCACTTTAGAAG
GACTTTTGTGTGTGTGTTCTTTCTGGCGGGAGGCCCTAACTCCTCTTAAC
GTGTGTT

Query= MSMg01no462_m17.b1 MSMg01no462_m17.b1 CHROMAT_FILE:
MSMg01no462_m17.b1 PHD_FILE: MSMg01no462_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:55 2005
         (452 letters)



>mm_chr2_94919061_94919912
          Length = 852

 Score =  791 bits (409), Expect = 0.0
 Identities = 435/455 (95%), Gaps = 19/455 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctaggccaagaacttaataataacaatacaaactggcatatcaatgtggatgctgaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctagtccaagaacttaataataacaatacaaactggcatatcaatgtggatgctgaa 260

                                                                       
Query: 61  gctccacacctggatgaatactacagacatctaatgacttccaagagaaaaacaaatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctccacacctggatgaatactacagacatctaatgacttccaagagaaaaacaaatatg 320

                                                                       
Query: 121 tatgaacaatgctaaatggattcaggttataattgtgtacacacacacacacacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tatgaacaatgctaaatggattcaggttataattgtgtacacacacacacacacacaca- 379

                                                                       
Query: 181 acacacacacacacaagtctaacaataaaaattaaagaaaaattaagatattacataaaa 240
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ---------------agtctaacaataaaaattaaagaaaaattaagatattacataaaa 424

                                                                       
Query: 241 atagaaggtagaaggtgttgatatagatggagaataatgataataggaataggatattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atagaaggtagaaggtgttgatatagatggagaataatgataataggaataggatattat 484

                                                                       
Query: 301 tatagaggactgaagatgataaaaataatattttat---atgtatatgaaatgtcataac 357
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 485 tatagaggactgaagatgataaaaataatattttattatatgtatatgaaatgtcataac 544

                                                                       
Query: 358 taaacatgtcattctaatacacaataacaataaaagcaataaaaactacacatatactca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taaacatgtcattctaatacacaataacaataaaagcaataaaaactacacatatactca 604

                                              
Query: 418 tatgatcaatcaatgataaagattatttgtggttg 452
           |||||||||||||||||||||||||||||||||||
Sbjct: 605 tatgatcaatcaatgataaagattatttgtggttg 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)