BAC Information

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BAC

Clone NameMSMg01-463L24
Chromosome2 (Build37)
Map Location 118,138,733 - 118,139,200
singlet/doubletsinglet
Overlap geneGpr176
Upstream geneRasgrp1, Thbs1, Fsip1, 1700054M17Rik
Downstream geneEif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463L24.T7 (MSMg01no463_l24.b1)MSMg01-463L24.TJ (MSMg01no463_l24.g1)
ACCAG548328AG548329
length731780
length of high quality
(start - end)
585 (80 - 664)253 (84 - 336)
definitionCHROMAT_FILE: MSMg01no463_l24.b1 PHD_FILE: MSMg01no463_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:17 2005CHROMAT_FILE: MSMg01no463_l24.g1 PHD_FILE: MSMg01no463_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATC
CGCGGAATTCTTGTTGCTTTCCCACTAACCTCATAGCAAGGCTTGATCTG
ACCCACTGGTCAGGTGAGTAGATGTAAAAATATACAAAGTTGTCAGGTGT
GGTGGCACATGCCTTTAATTTGGTACTTGGGAGGCAGAGGCAGGCAGATT
TGAGTACAAGACTAGTCTAGTCTAAGTGGTAGGATGTTCCAGGCTAGCCA
GGGCTACACAATGAAAGCCTGTCTCAAAAAACAAAAACAAAAAACAATTT
TGAAGCCAGGTGTGGTACACACTTATATAGATTGTGATGCTCTTGTTCAA
AAACATGAGAGATAGATAAAGAGATAGAAAGAAAGAAAGATAGATATTTG
TGTTATTGTTCAGACAGAGAAGACAAAATCTACTGTCCTCTTCATGCTTC
TCATTTTGCAGCAGCGGCCTCTGTTGTATAACAACTTAGGAGACACTAGA
CAAGGCGATCACCTGTCACTGAATCAGGAGCTAGGCAGTTGGTCCTGTCA
ATGTCTTTCCTGCTCATGGCCTGGAGAGGGGTACTTACAGTGTTTACACT
GCCGCCGTANAGCCAAGTTACCAGGTTTTTTGTTGGTGTAGGGACAGTGC
TAATGGCTTCAAAGCAGTAAGCATGTATGCTTTACAGCGGAGGAGCTTAC
TGGAACCAAACAGGAACCTTAAGCAGCTCTN
GCAATTCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTGCAGTGACAAT
TCTGGAATTTTTATTATAAGAATGAATGTTTTCATTTTAAGCCCATGTGT
GGAAATAAAGGACTGCTTCGGACTCTCTACAGCAGTTGTCTGTGATTTCT
CTGGTGCTCTAGCAGAAGTGTGATTTTGCCAACTGCAGATGGTTTCTGCA
ATTGTGTGACATTTGGGATTATGGTAACTTCTCAGAGGGTATAAAAATGC
TAGGGAACCGAGAGGCAGGGTGGGTGGTTGTTGATGTTGTGGTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTTTNNTNTTTNTNNTTTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNNNNNNNTTTTTTTTTT
TTTTTNTTTTNTNTTNTNTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNNTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTTTTTNNTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_l24.b1 MSMg01no463_l24.b1 CHROMAT_FILE:
MSMg01no463_l24.b1 PHD_FILE: MSMg01no463_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:17 2005
         (585 letters)



>mm_chr2_118138216_118139200
          Length = 985

 Score =  806 bits (417), Expect = 0.0
 Identities = 455/468 (97%)
 Strand = Plus / Minus

                                                                       
Query: 118 gatttgagtacaagactagtctagtctaagtggtaggatgttccaggctagccagggcta 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gatttgagtacaagactagtctagtctaagtggtaggatgttccaggctagccagggcta 926

                                                                       
Query: 178 cacaatgaaagcctgtctcaaaaaacaaaaacaaaaaacaattttgaagccaggtgtggt 237
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 cacaatgaaagcctatcttaaaaaacaaaaacaaaaaacaattttgaagccaggtgtggt 866

                                                                       
Query: 238 acacacttatatagattgtgatgctcttgttcaaaaacatgagagatagataaagagata 297
           ||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 acatacttatatagacagtgatgctcttgttcaaaaacatgagagatagataaagagata 806

                                                                       
Query: 298 gaaagaaagaaagatagatatttgtgttattgttcagacagagaagacaaaatctactgt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaagaaagaaagatagatatttgtgttattgttcagacagagaagacaaaatctactgt 746

                                                                       
Query: 358 cctcttcatgcttctcattttgcagcagcggcctctgttgtataacaacttaggagacac 417
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctcttcatgcttcttattttgcagcagcggcctctgttgtataacaacttaggagacac 686

                                                                       
Query: 418 tagacaaggcgatcacctgtcactgaatcaggagctaggcagttggtcctgtcaatgtct 477
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 tagacaagacgatcacctgtcactgaatcaggagctaggcagttggtcctgtcagtgtct 626

                                                                       
Query: 478 ttcctgctcatggcctggagaggggtacttacagtgtttacactgccgccgtanagccaa 537
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 625 ttcctgctcatggcctggagagggatacttacagtgtttacactgccgccgtaaagccaa 566

                                                           
Query: 538 gttaccaggttttttgttggtgtagggacagtgctaatggcttcaaag 585
           ||| |||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 565 gttgccaggttttttggtggtgtagggacagtgctaatggcctcaaag 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)