BAC Information

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BAC

Clone NameMSMg01-463O12
Chromosome2 (Build37)
Map Location 55,560,025 - 55,560,250
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O12.T7 (MSMg01no463_o12.b1)MSMg01-463O12.TJ (MSMg01no463_o12.g1)
ACCAG548448AG548449
length754758
length of high quality
(start - end)
244 (80 - 323)243 (82 - 324)
definitionCHROMAT_FILE: MSMg01no463_o12.b1 PHD_FILE: MSMg01no463_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:30 2005CHROMAT_FILE: MSMg01no463_o12.g1 PHD_FILE: MSMg01no463_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGGACACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAACAGCA
TCCGCGGAATTCATTTACTCACTACTAAGTTCCCGTGAACCTGTAAATTG
TGAATATATTTTCTGGTTTTTAGTAATCATTTATTAGATGGCACTACTCA
TTGTACTCAGTGACAAGTATACTCAAATAATGTGAGTTAACAGGGCATGA
TTGACATATTTTACAAAGACATTCTGAAGGCATGTGAGAAAGGTACCAAA
GACTTTGTAATGTACTTTGCAAAAAAAAAAAAAAATTAAAGGGGCATTAT
TGGCAAAATGGTACCATGCACCTCGTAATTATTATCCTGGNTTTATTCAA
ATTCTGATTTCTGTGACCCTATATCTTATTGTAATATGGACATCGCATTG
TAATGCTTATTTAAAAAAAGTTCCTGTGTCAATGTTGTATGAATATTGCT
CTCCAGGTATCTCTGATTGGTGACTACAAACATGATCATTCAGTAACTGG
AAAGAGGAGATAATGTAGGACTGGACTTCTGTTTCCATCCAGAGGGGTAG
AGAGAGAAGAAGAGAATTCCCCATTTAGAGGGGACATCTTGGAAGCCATC
ATGGAAAACAGATAGGGGAACAAATAATATCCCTAATCTAACCTTAAAAT
ATCTTTGAATAACAATTTTTCTATTCACTATTTTTGCCTTGTGAATGTAA
CTTACCTTCACCTTTATAACGATTTTCTAATTTTAGCTATATTTCTTGGC
CCTN
CTTTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAATTTTGCAGGCAAAT
GGATGGACCTAGAAAATATCATCCTGAGCAAGGTAACCCAAACCACAGAG
GATATACATGGTATGAACTTGCTGATGAGTGGATATTAACTAAAAAGTTC
AGAATACCCATAATACAACTCACAGACCATATGAAGCTTAACAAGAAGGA
TGGCCCTTGAGTGGATACAGTCCCACTTGGATGGGGGAACAAATTAATCA
CCAGAGGCAGAAGGAGGGAGCTTCCTAGATGGGAGAGGGAAGGGGGAATG
GAAAGGGGAGCAGGATCAGGTATCAGGGGAAACAGAAGAGAAGCCTGGGG
GAGGGGGCAGGAGAATACGGAGGAATATACTGAAGTGTGGGGTAAAATGT
CGGGAGAACCACTATAAAGTCCCAGTCACCATCGCTGTGATAGGCTCCCA
TAACCTTTACTGATACGCTCCTCCGTGTAGATGTGTAACCCTGAATTACT
CCACCTCCCTGTTGGTAGACATGCCCTCCCACCTGATCAATTGTCTCCCT
CATCCCTTCTCTTCTACTTTTTGACTCCCAATTGCTCCCTGAATTATTGA
AAATTCAATTTTTTTTTTCTTTTTTTCTATTCCTGGACTTTAATCGTCAT
ACTTTGTTCAATCTTACCCTTTATGTTGTAATTTCTTACCTTTTGTACAC
TCCTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o12.b1 MSMg01no463_o12.b1 CHROMAT_FILE:
MSMg01no463_o12.b1 PHD_FILE: MSMg01no463_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:30 2005
         (244 letters)



>mm_chr2_55559814_55560458
          Length = 645

 Score =  335 bits (173), Expect = 2e-96
 Identities = 215/233 (92%), Gaps = 8/233 (3%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctgtaaattgtgaatatattttctggtttttagtaatcatttattagatggcactactca 71
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 212 ctgtaaattgtgaatatattttctggttttcagtaatcatttattagatggcactactca 271

                                                                       
Query: 72  ttgtactcagtgacaagtatactcaaataatgtgagttaacagggcatgattgacatatt 131
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 272 ttgtactcagtgacaagtacactcaaataatgtgagttaacagggcatgactgacatatt 331

                                                                       
Query: 132 ttacaaagacattctgaaggcatgtgagaaaggtaccaaagactttgtaatgtactttg- 190
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| 
Sbjct: 332 ttacaaagacattctgaaggcatgtgagaatggtaccaaagactttggaatgtactttgt 391

                                                                
Query: 191 caaaaaaaaaaaaaaattaaaggggcattattggcaaaatggtaccatgcacc 243
           ||||||||        |||||||| ||||||||| |||||| ||| |||||||
Sbjct: 392 caaaaaaat-------ttaaagggacattattggaaaaatgatactatgcacc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)