BAC Information

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BAC

Clone NameMSMg01-463P23
Chromosome2 (Build37)
Map Location 79,930,464 - 79,930,918
singlet/doubletsinglet
Overlap genePde1a
Upstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
Downstream geneLOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463P23.T7 (MSMg01no463_p23.b1)MSMg01-463P23.TJ (MSMg01no463_p23.g1)
ACCAG548518AG548519
length733761
length of high quality
(start - end)		522 (82 - 603)453 (85 - 537)
definitionCHROMAT_FILE: MSMg01no463_p23.b1 PHD_FILE: MSMg01no463_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:37 2005CHROMAT_FILE: MSMg01no463_p23.g1 PHD_FILE: MSMg01no463_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAAAAATTAGTCCTCGTGTCACTATACGACTCACTATAGTTCGAGGA
TCCGCGGAATTCTTTGTTTATTTCTAAAACCCATTTTTTAATGGGGTTAT
TTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGGATATT
AGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGG
TGACCTTTTTGTCTTATTAAGTGGATCAAGGAACTTCACATAAAACCAGA
GACACTGAAAATTATAGAGGTTAAAGTGGGGAAAAGCCTTGAAGATATGG
GCACAGGGGAAAAATTCCTGAATAGAACAGCTATGGCTTGTGCTGTAAGA
TCAAGAATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGTAAGGC
AAAAGACACCGTCAATAAGAGTCTCTGGTTTTATGTGGAGCTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGCAGATAGGAATGAGTCAATTTGCAT
TCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTAAAATTGC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGA
CCATAGGCGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCTTTGGTC
TACTTGCCTGTCGCTATACCAGTACCATGCCGCTTTTATCACAAAGCCTC
AAAGATATTGGCACCCGGTGAAAAATTCCTGAA

NTTTTTTTNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGTAGCTTAAAGA
AAAGATAAATACATTCAGTCTTTCTTTTTGTTTTGCTTTGCTTTTGGTTT
GGTTTGGTTTTGTCCTTTTCAAGACAAAGTTTCCCTGTATAGCTGTGGCT
GCCCTGGAACTTCCTCTGTAGACAAAGCTGACCTCCAACTCAGAGATCTG
CCTGCCGCTGAAAGATTAAAGGCATTAGCCACCACCACCTGGCTTGAATG
TAGTCTTTCAGTCTTATAGTCTGTATTCATTTAAAAGTATTTGTTGAATA
AACAATACAGTACAAATCATATGTGATTCAAATAGTAGCTATGGTATTAT
ATGTGTGCGACATATAAATCATCTCTTCACACCCTGTTCTTGCTTGTTTT
CTCATTGGAAGTCTTTGTGAAAGGCTTTTACTACAGGAATTATTTGACCT
TAAATACACAGAAGCATGGCAATGTAGCCTGCTATGAAAAAATCACAAAA
CTGATCAGATTTGAGGAAAGGGACAGGATGAAAGGGAAAAGTGGATGATA
AACTTGGAAAAAATTATTTGAAAAGTTCATATCAGGTAAAAAATTTTTAC
ACATAATTTATTAAAAAAAAATTTTTTTTTGTTATAAAAAAAAAGTTTAT
TTCCCTTTATTTTAGGAAAGATCTCTCTTTTAAAACCTGGTTGAAAAAAA
AATTTTAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_p23.g1 MSMg01no463_p23.g1 CHROMAT_FILE:
MSMg01no463_p23.g1 PHD_FILE: MSMg01no463_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:37 2005
         (453 letters)



>mm_chr2_79930264_79931118
          Length = 855

 Score =  845 bits (437), Expect = 0.0
 Identities = 450/455 (98%), Gaps = 2/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagtagcttaaagaaaagataaatacattcagtctttctttttgttttgctttgcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagtagcttaaagaaaagataaatacattcagtctttctttttgttttgctttgcttt 260

                                                                       
Query: 61  tggtttggtttggttttgtccttttcaagacaaagtttccctgtatagctgtggctgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtttggtttggttttgtccttttcaagacaaagtttccctgtatagctgtggctgccc 320

                                                                       
Query: 121 tggaacttcctctgtagacaaagctgacctccaactcagagatctgcctgccgctgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaacttcctctgtagacaaagctgacctccaactcagagatctgcctgccgctgaaag 380

                                                                       
Query: 181 attaaaggcattagccaccaccacctggcttgaatgtagtctttcagtcttatagtctgt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaaaggcatgagccaccaccacctggcttgaatgtagtctttcagtcttatagtctgt 440

                                                                       
Query: 241 attcatttaaaagtatttgttgaataaacaatacagtacaaatcatatgtgattcaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcatttaaaagtatttgttgaataaacaatacagtacaaatcatatgtgattcaaata 500

                                                                       
Query: 301 gtagctatggtattatatgtgtgcgacatataaatcatctcttcacaccctgttcttgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagctatggtattatatgtgtgcgacatataaatcatctcttcacaccctgttcttgct 560

                                                                       
Query: 361 tgttttctcattggaagtctttgtgaaaggcttttactacaggaattatttgac--ctta 418
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 561 tgttttctcatcggaagtctttgtgaaaggcttttactacaggaattatttgactcctta 620

                                              
Query: 419 aatacacagaagcatggcaatgtagcctgctatga 453
           ||||||||||||||| |||||||||||||||||||
Sbjct: 621 aatacacagaagcatagcaatgtagcctgctatga 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 855
Length adjustment: 10
Effective length of query: 443
Effective length of database: 845
Effective search space:   374335
Effective search space used:   374335
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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