Query= MSMg01no464_h12.b1 MSMg01no464_h12.b1 CHROMAT_FILE:
MSMg01no464_h12.b1 PHD_FILE: MSMg01no464_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:15 2005
(192 letters)
>mm_chr2_72749228_72749819
Length = 592
Score = 329 bits (170), Expect = 8e-95
Identities = 185/190 (97%)
Strand = Plus / Minus
Query: 1 ggaggtcagttttgagggagtgtcataagacccactgaccatgtctgtggtgggctctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggaggtcagttttgagggagtgtcataagacccactgaccatgtctgtggtgggctctct 331
Query: 61 gtctcctgagataagaccgttgctcttatctctgttgggtgatattcctctatgagactt 120
|||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 330 gtctcccgagataagaccattgctcttatctctggtgggtgatgttcctctatgagactt 271
Query: 121 gtattttgggtttgtttgataagttctcatatctgataagcagacattatctaaaatctg 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcattttgggtttgtttgataagttctcatatctgataagcagacattatctaaaatctg 211
Query: 181 ataagcagac 190
||||||||||
Sbjct: 210 ataagcagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space: 107456
Effective search space used: 107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_h12.g1 MSMg01no464_h12.g1 CHROMAT_FILE:
MSMg01no464_h12.g1 PHD_FILE: MSMg01no464_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:15 2005
(527 letters)
>mm_chr2_72544740_72545666
Length = 927
Score = 866 bits (448), Expect = 0.0
Identities = 505/534 (94%), Gaps = 21/534 (3%)
Strand = Plus / Plus
Query: 1 tttgtcttccttctccagctcccatgtgcatgagtgacacaggaagtcccgctccctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtcttccttctccagctcccatgtgcatgagtgacacaggaagtcccgctccctgga 260
Query: 61 atacatgtccaatcaagcactggggaatctgatacagtttcctttcctgtttagcttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacatgtccaatcaagcactggggaatctgatacagtttcctttcctgtttagcttcta 320
Query: 121 gatagcaatgcagaaggcaattcatccacctgagggtggccaaaatagagaacttggttt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gatagcaatgcagaaggcaattcatccacctga-ggtggccaaaatagagaacttggttt 379
Query: 181 taggaagtcaggtctctgctacatcaaaacactttatcattttgaagacagagattgagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taggaagtcaggtctctgctacatcaaaacactttatcattttgaagacagagattgag- 438
Query: 241 tttttt------tctttcctaggatt-aaaaaaaaatccaaaaatccataatagcctaga 293
| |||||||||||||| |||||||||||| || |||||||| |||
Sbjct: 439 -----tgaaggctctttcctaggattgaaaaaaaaatcc----at---taatagcccaga 486
Query: 294 gttgagaactaacctggattggctacctctttgcatctctccacccacatcttcctggag 353
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 487 gttgagaactaacctggattggccacctctttgcatctctccacctacatcttcctggag 546
Query: 354 aatcccaggatgacagcaattagaacttcagtgtggttgttaaaagccaatgacagggag 413
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 547 aatcccagggtgacagcaattagaacttcggtgtggttgttaaaagccaatgacagggag 606
Query: 414 gctcatccctatgtcttgtccttttaggcccttgatattgaaggaccagacctttctaca 473
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 607 gctcatccctatgtcttgtccttttaggcccttgatattgacggatcagacctttctaca 666
Query: 474 ctcgttcttatggaatctccttgagtagtaccaacacccttccaagttttccag 527
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctcgttcttatggactctccttgagtagtaccaacacccttccaagttttccag 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
