BAC Information

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BAC

Clone NameMSMg01-464H20
Chromosome2 (Build37)
Map Location 127,258,632 - 127,258,874
singlet/doubletsinglet
Overlap geneA530057A03Rik
Upstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
Downstream geneFahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464H20.T7 (MSMg01no464_h20.b1)MSMg01-464H20.TJ (MSMg01no464_h20.g1)
ACCAG548893AG548894
length774771
length of high quality
(start - end)
242 (72 - 313)240 (69 - 308)
definitionCHROMAT_FILE: MSMg01no464_h20.b1 PHD_FILE: MSMg01no464_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:17 2005CHROMAT_FILE: MSMg01no464_h20.g1 PHD_FILE: MSMg01no464_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAAT
TCTCCTAGTTTTCCAAAAAACAGCTGTAGCTTTGANAAGCTTTTGACTCT
TACACATTTTAGGTCCGCTTCATTCTTTGATCTGTCTGTATCCCAGTAGT
GTTGTTCCGGACACTGAGAAGGAGCAGGAGTGGACCCCACCAACTGGCCT
CCTCCTGGCCCTTAAAGAGGAGGACCAGCTCCTGGTCAGAAGACTGATTC
GGCATGTTCTGAGTGGTAAGGGAAACGCAGAGCTGCACCTTTGGAGTGTG
ACTTGAACAGCACTTTCTCNGTGTAGATAATAAAGGGCTAGTTATCAGGA
CCCCATGTATGCCCGTACCTGACCCCCACCCCCTTCACAGCACACAGGGA
TACTGGAAGAGCGGGGCATCCAGGGAAGTGGGGAGCAGATGAGCTCAGTA
TCTGAGCCTAAGGCAGCTGTGCAGATCTCTGTGAGATCCACCCAACCTCA
CCCTAAAGGTCCTTTTAACAGTGTCCTTAGCTGTGACGATGACTGACTGT
AGGAGCAACATGTGCCTACTGAACGCACGTGCTGACTGGATGTCCCTCTG
GCATGCTGTTGGTGTGGCTCTGGCTCACAAAGCCAGTGAACCTGCTTTTC
CTTGTTTGGGTAAAACCCCCCCCTGCGTGCTCGTTCCTTTTTCGCCCCAG
TATCGCTTTTCCCACTTTTTTTTTTCGTCCCCTTCTTTCTTTTACCCCTT
CCTTTCCCTTTCCTTCTTTTCACC
TGAAGTGGGAGGCCTGGGGGCGCCTGGCCTCAACAAAAGGTGACCTATAG
AAGGTTTCAGAAATACGCAGGACAGGAGCCTGGAGGCAGGAGCTGACATA
GAGACCACTGGGAAGTACTGCTTACTGGCTTGCTCCTCATGGCTTATAGC
ACCCAGGGCCACCAGCCCAGGGATGTCCCCATGTACAATAGGCTGAACTC
TCCCCCATCAATCAATGTAAAAACTATCCTATAGGCTTCCCTGTCTACAG
CCAGATCCGATGGAGGTATTTTCTCAATTGGGATTTCCTCCTGTCCGATG
ACTTTAGCCTGTTTTTAGTTGACATAAAACTCACCAGTACACACAATGTT
GACATAACTCTTGGCTACTGAAAGCTTCAGCCTGCACGTGGCCAACAGAG
AGTTGGGACTGCCGTTCCTGGTGGCCTCAGGACAGCATTCATGGTATGGA
CCTGGCAACCCTCCCAGAAGTCTGGGTGTGTCAACTGGCACCTCTCAGCT
GATGAGGCCAACTTCTCTATTCCTCCCCGGGGATGAAGGTCACACTAGTG
TTTGATGGACAGTCTGTGTTCCTGTGGCATTTCCCCTACTTCCCAAGAAG
TCAATATACAACTTCTTGTCCACATTTACCTGTAATGGAACTGTTGCTTT
CTCTGATTACTTGACCCCCCGGGTCTTTCATCGTGGTTTGCCATTCTTCT
TCTCCTTTCTGTTTTGTCATGTTACCTCCGTCTAACCCCCTTTTTTGCGC
TTTACTCCGTCTTCCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_h20.b1 MSMg01no464_h20.b1 CHROMAT_FILE:
MSMg01no464_h20.b1 PHD_FILE: MSMg01no464_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:17 2005
         (242 letters)



>mm_chr2_127258432_127259074
          Length = 643

 Score =  433 bits (224), Expect = e-126
 Identities = 238/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgtagctttganaagcttttgactcttac-acattttaggtccgcttcattctttga 59
           |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 201 agctgtagctttgaaaagcttttgactcttacaacattttaggcccgcttcattctttga 260

                                                                       
Query: 60  tctgtctgtatcccagtagtgttgttccggacactgagaaggagcaggagtggaccccac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtctgtatcccagtagtgttgttccggacactgagaaggagcaggagtggaccccac 320

                                                                       
Query: 120 caactggcctcctcctggcccttaaagaggaggaccagctcctggtcagaagactgattc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 caactggcctcctcctggcccttaaagaggaggaccagctcctggtcagaagactgagcc 380

                                                                       
Query: 180 ggcatgttctgagtggtaagggaaacgcagagctgcacctttggagtgtgacttgaacag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcatgttctgagtggtaagggaaacgcagagctgcacctttggagtgtgacttgaacag 440

              
Query: 240 cac 242
           |||
Sbjct: 441 cac 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)