Query= MSMg01no464_k22.b1 MSMg01no464_k22.b1 CHROMAT_FILE:
MSMg01no464_k22.b1 PHD_FILE: MSMg01no464_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:32 2005
(444 letters)
>mm_chr2_38509762_38510604
Length = 843
Score = 706 bits (365), Expect = 0.0
Identities = 429/461 (93%), Gaps = 22/461 (4%)
Strand = Plus / Minus
Query: 1 ctcgaactcagatatcctcctgcctctgcctctg---------ct---tcctgagtgcta 48
|||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct: 526 ctcgaactcagatatcctcctgcctctgcctctgtctctgcctctgcctcctgagtgcca 467
Query: 49 gaattaaaggtatgtaccaccatgccggcttctgttgtacattttaaattctgcttctcc 108
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 466 gaattagaggtatgtaccaccatgctggcttctgttgtacattttaaattctgcttctcc 407
Query: 109 caccttctgactgtgcttctaaggacacccgtgattgcgctggagcctcccaaatactcc 168
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 406 cacc-tctgactgtgcttctaaggacacccgtgattacactggagcctcccaaatactcc 348
Query: 169 atattaaccacacttaagttattattgcatgtatgtgttcatggaataaagggggagcat 228
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atattaaccacatttaagttattattgcatgtatgtgttcatggaataaagggggagcat 288
Query: 229 atgtgccaagtgtggaggtc----ttttatactttgtgaagtcatttctctacttctaca 284
|||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 287 atgtgccaagtgtggaggtcagga----aaactttgtggagtcatttctctacttctaca 232
Query: 285 tttatgtgggtccagcgattgaactcaagttcccaggatgaacagcaagcccctttacta 344
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tttatgtgggtccagggattgaactcaagttcccaggatgaacagcaagcccctttacta 172
Query: 345 gctatgccatcttgctggtccttatactaatcttgttaataccagtggcttacaacttca 404
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gctatgccatctcgctggtccttatactaatcttgttaataccagtggcttacaacttca 112
Query: 405 aa-ttttataaacgcacaccagggtggttaatattaatcgt 444
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aaattttataaacgcacaccagggtggttaatattaatcgt 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 843
Length adjustment: 10
Effective length of query: 434
Effective length of database: 833
Effective search space: 361522
Effective search space used: 361522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_k22.g1 MSMg01no464_k22.g1 CHROMAT_FILE:
MSMg01no464_k22.g1 PHD_FILE: MSMg01no464_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:32 2005
(434 letters)
>mm_chr2_38371076_38371909
Length = 834
Score = 832 bits (430), Expect = 0.0
Identities = 433/434 (99%)
Strand = Plus / Plus
Query: 1 gagtgtgaaggaatgccgacagggaaggggcgggtagttgctgtgggaagccttaggcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtgtgaaggaatgccgacagggaaggggcgggtagttgctgtgggaagccttaggcgc 260
Query: 61 ctgccttttccccaaattgtttaaccctcacacttcaaaatcagtgtggctcttttaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccttttccccaaattgtttaaccctcacacttcaaaatcagtgtggctcttttaagg 320
Query: 121 ggaatcctcctttgtctccctgacatccgagaggttcctgggttgtgccttacactctga 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggaatcctcctttgtctccctgacatccgagaggctcctgggttgtgccttacactctga 380
Query: 181 cttctctctcattctttcatgacccatttactaacacctatccttcggccctttaagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctctctcattctttcatgacccatttactaacacctatccttcggccctttaagctg 440
Query: 241 gggatttctgggaaggactctatctgcaaaggggcatccttactttccaatgacctgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatttctgggaaggactctatctgcaaaggggcatccttactttccaatgacctgctc 500
Query: 301 tgatgatgttcagggtctcgcagtgccaagaagagcaaatcaccagagcatggggtggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgatgttcagggtctcgcagtgccaagaagagcaaatcaccagagcatggggtggag 560
Query: 361 atgagcacaggaggctacctaggctgaacttctgggattggaaacggcccagttatccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgagcacaggaggctacctaggctgaacttctgggattggaaacggcccagttatccat 620
Query: 421 tttacagaatggaa 434
||||||||||||||
Sbjct: 621 tttacagaatggaa 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
