BAC Information

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BAC

Clone NameMSMg01-464L17
Chromosome2 (Build37)
Map Location 162,769,711 - 162,769,815
singlet/doubletsinglet
Overlap geneL3mbtl
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6
Downstream geneLOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464L17.T7 (MSMg01no464_l17.b1)MSMg01-464L17.TJ (MSMg01no464_l17.g1)
ACCAG549077AG549078
length783882
length of high quality
(start - end)
194 (120 - 313)105 (68 - 172)
definitionCHROMAT_FILE: MSMg01no464_l17.b1 PHD_FILE: MSMg01no464_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:36 2005CHROMAT_FILE: MSMg01no464_l17.g1 PHD_FILE: MSMg01no464_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGCGGGCGCTAAACGACNCACTAATGCAACAACACCGCGGAATT
CCATGGCTTGCCAGAGAGCTTGTCTCANAAGAGTAGAGAATGATTGAAAA
AACACTCAGCATATACCATAGACCTCTGAGTCCTCATGTGTGCACACATG
TGAAGGTGTACCTGTAGGCACAAGTATACATATACACACACATACACACA
CATGCATGTACACACACATACACACATGCACATACACACACAGGTGCTCA
CACAAACAGGTATATATACGCACATACACACACATGCACACACGTGCGCA
CACACATACACATACTCNTTCACGCACACACATGCATGCACGCACACACA
CACACACACACACACACACACTAATTGAATGATCCCATCACCTTAGGGAT
AGTGCTTTATAAACCACATAACTCCCAAAACAAATTCAATAAAGTAATAA
AGAAACTGAGGTAGGAAAATTATGAGCTCAAGGACAGTCTGGGCTACCCC
TTAAGACCAGTCTCTAACACACACTCCTAATACGTAATACCTTTCGCCCT
AATCACGCTGGCTCGAATGATAAATGTTTCCATACTCTTACCCCTTCGTT
TCTCCCCACTCTGTCATGTTTCACCCCCCCCGGATCTCCGAATATCCATT
TCATTTCCGGGCCTATGTTATTCATCCCCCCCGATGCCCTATATTTGTTC
ATTATAAATACTGTCTTCCTCTCTCAATTTATTACTACTATCCTCACTTA
CCCCCCACTAATCACTTTTCCCCTTTTTCTTTG
ATAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCCGCGAAATTCCGCCATTTTAGCGGTTAGAAAGTAACCCTT
CTGCAGAGCGTACAGATCAGTGACCGCCCCTCCCGCGACTGTCTGCATTA
GTCCCAAGGAGGTGGGTGGTGGCTTTGCCACCTCTCCTTTTCTCTTTCTG
TTTCTATCTCCTTTCTCGCCCCTTTTTTCTTACTGTCCTACTTTTTTTTT
TCTTCATCTATTCTTCTTTGCTTTTTTAATATAATCTTACTTGCTTCCCA
TCAACCCAACCTTTTTTTTTTTTCACAAACCCTTCATTTCCCCTCTTTAT
TCACATCCCTTTATTATTTCCTCTTCTTTTTTCCTTTTAACATCTTTATT
TTTCTCCTATTTTATATCCTCCCCCCCCCCCCCCAAACAAAATTGTCTAA
AACCCTTTATTTTTTTCTTTCCTTTTCTCTCCCTCCTTTTCTTCCACTCT
TTTTTCTCCCTTCTATACTTTTTCCTTCTTCATCTCTTCTCTATTTTACC
CAACTATATTTATATTTTCTTCATTTATTTTTCCATCTCTATTTCTCCAT
TCCCTCCTTCTTCTTTTTTCCCTCATTTTTTTTTATATTTTCCTTTCTTC
TCCATTCCATCCTTTTCCTATTATCATTATCTACTCTTTTCTCTTTCTCC
ATCCTTCATCATTTACTCCCACTTTTTTTCTCTCCCACTTTCTTCTCTAT
CTATTCTATTACTCCTCTTCCTCTCTTACTTCCTCTTTTTTTTCTTTTTC
TCCCTCACCATCCTCTCCTTCTATACTCCTTTTATTTCTATTTTACTCTT
TTTTTTTCCCTCCTTCCTTTACTATCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_l17.g1 MSMg01no464_l17.g1 CHROMAT_FILE:
MSMg01no464_l17.g1 PHD_FILE: MSMg01no464_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:36 2005
         (105 letters)



>mm_chr2_162769511_162770015
          Length = 505

 Score =  188 bits (97), Expect = 1e-52
 Identities = 103/105 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccgccattttagcggttagaaagtaacccttctgcagagcgtacagatcagtgaccgc 60
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 201 ttccgccattttagcggttagaaagtaactcttctgcagagcggacagatcagtgaccgc 260

                                                        
Query: 61  ccctcccgcgactgtctgcattagtcccaaggaggtgggtggtgg 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcccgcgactgtctgcattagtcccaaggaggtgggtggtgg 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)