Query= MSMg01no464_l19.b1 MSMg01no464_l19.b1 CHROMAT_FILE:
MSMg01no464_l19.b1 PHD_FILE: MSMg01no464_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:36 2005
(607 letters)
>mm_chr2_134021547_134022556
Length = 1010
Score = 1069 bits (553), Expect = 0.0
Identities = 581/591 (98%), Gaps = 3/591 (0%)
Strand = Plus / Minus
Query: 20 attagtgagtaaccagaactttgaatgcattcataaaacagtcattttcctaactatctt 79
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 680 attagtgagtaaccagaactttgaatgcattcataaaatagttattttcctaactatctt 621
Query: 80 gttgcttgtttttattactataaagggagaaac-aaaaaaaaatcagaaactagggaacc 138
||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 620 gttgcttatttttattactataaagggaggaacaaaaaaaaaatcagaaactagggaacc 561
Query: 139 t--aaaaaaaaaaagagtagaaaattaattctgtataaatcctcccatttctttccagat 196
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaaaaaaaaaaaagagtagaaaattaattctgtataaatcctcccatttctttccagat 501
Query: 197 aaaagcctcagatcacacagaaaccttgacttagaatccaccatcaattttccatttttg 256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaagcctcagatcacacagataccttgacttagaatccaccatcaattttccatttttg 441
Query: 257 gcaacctcactcagcaggaatcctttttctaaaatataggtcttcatctccttggatatg 316
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 gcaacctcactcagcaggaatcctgtttctaaaatataggtcttcatctccttggatatg 381
Query: 317 tggggtgcaaacatatgatgtttctctgctcagaaagagctcccttttcttcagctaggt 376
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 tggggtgcaaacatatgatgtttctctgctaagaaagagctcccttttcttcagctaggt 321
Query: 377 ggcttatgattaacaccaggctcatcagcatctcacacagctcattctatgaataaatta 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcttatgattaacaccaggctcatcagcatctcacacagctcattctatgaataaatta 261
Query: 437 ccatgtcttatgttaaatgtataaataaggtaaaaattgaatttccctcttggaatttca 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccatgtcttatgttaaatgtataaataaggtaaaaattgaatttccctcttggaatttca 201
Query: 497 cactgctcactaccagaatagagtctgataatcttatggtcaagaattccattaagtttg 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cactgctcactaccagaatagagtctgataatcttatggtcaagaattccattaagtttg 141
Query: 557 agttcaatttcccagttatcaaactctatttgatatgtatgcaatttgttt 607
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agttcaatttcccagttatcaaactctatttgatatgtatgcaatttgttt 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1010
Length adjustment: 10
Effective length of query: 597
Effective length of database: 1000
Effective search space: 597000
Effective search space used: 597000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_l19.g1 MSMg01no464_l19.g1 CHROMAT_FILE:
MSMg01no464_l19.g1 PHD_FILE: MSMg01no464_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:36 2005
(624 letters)
>mm_chr2_133994035_133995056
Length = 1022
Score = 1164 bits (602), Expect = 0.0
Identities = 618/624 (99%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 aagaccagggacagccacaggcaggtttcttacttctagagcagttagtagctttcttta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaccagcgacagccacaggcaggtttcttacttctagagcagttagtagctttcttta 260
Query: 61 tatgcacacaaaagatcaaatgtagtagccagcaaacaccttttttttttgctgtaaatt 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tatgcacacaaaagatcaaatgtagtagccagcaaacacctttttttt--gctgtaaatt 318
Query: 121 gtcatcttttatgactgattttgcttatattatgtcttggagacaaaaatagatgtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtcatcttttatgactgattttgcttatattatgtcttggagacaaaaatagatgtttta 378
Query: 181 gaaaaagtcatcaaatatatatcaacaaagtgctatggttaggaacaggcatttataatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaaaagtcatcaaatatatatcaacaaagtgctatggttaggaacaggcatttataatt 438
Query: 241 ccaatgctaattttatgaaaatgatatttgaaaacaatacaaagagaactgaataacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccaatgctaattttatgaaaatgatatttgaaaacaatacaaagagaactgaataacaca 498
Query: 301 tttgatccatgtattttatatttcaggaacatggaccacaccctcatgatgaaggctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttgatccatgtattttatatttcaggaacatggaccacaccctcatgatgaaggctttg 558
Query: 361 cttatatatcattttaaaggcttccacccatactggaacttagcccaccagagaatgagg 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctcatatatcattttaaaggcttccacccatactggaacttagcccaccagagaatgagg 618
Query: 421 ttacaagaatatattagttcccttgtgtcatcaggctccttagctagggaaagtaaataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttacaagaatatattagttcccttgtgtcatcaggctccttagctagggaaagtaaataa 678
Query: 481 aatccagacttggaactgtatgccatgctgctgttcaacctttggtaatctttccatatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aatccagacttggaactgtatgccatgctgctgttcaacctttggtaatctttccatatc 738
Query: 541 acaaacagtcagggtcaaattacagaatagcggtatcatctagtaactctttcacgtaat 600
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acaaatagccagggtcaaattacagaatagcggtatcatctagtaactctttcacgtaat 798
Query: 601 aaaattaacaatccctttgaacct 624
||||||||||||||||||||||||
Sbjct: 799 aaaattaacaatccctttgaacct 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
