BAC Information

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BAC

Clone NameMSMg01-464P13
Chromosome2 (Build37)
Map Location 23,413,884 - 23,414,045
singlet/doubletsinglet
Overlap gene4921517N04Rik
Upstream geneMyo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822
Downstream geneLOC100039149, Sh3d2c-ps1, Hnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P13.T7 (MSMg01no464_p13.b1)MSMg01-464P13.TJ (MSMg01no464_p13.g1)
ACCAG549261AG549262
length735759
length of high quality
(start - end)
651 (74 - 724)162 (84 - 245)
definitionCHROMAT_FILE: MSMg01no464_p13.b1 PHD_FILE: MSMg01no464_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:54 2005CHROMAT_FILE: MSMg01no464_p13.g1 PHD_FILE: MSMg01no464_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATAATTGCGGCGCTATACGACTCACTAATTCCGAGAATCCGCGG
AATTCCACATGTATCATTCCCAAGTTATAGAATCTTTCTTTACCATTAAC
TGTGGATGCTTTGTAGTCTGCGACTTAATTTTTCATTGTAATATTATTAA
TCTTATACTGAAGGCTTCAGTTTGCTTTTCTGTATTTTGAGCTCCATGGC
TGTTGGAGAAAAGATTCTCTTTCAGGACACACTGAACAATCTTCAGGCTG
CTTACACACATCAGGAGCTTGACAGTTTTATCACTGAGTTCATTGTCATC
CTTCTTCACAATATTCTTAGATGATAGAATTTGGATAACTTTATCACAGA
TCTCATTCATTTAGTATATCAATTTATTCAGAGATACTAGAAACAACTAA
CCAGCATAATTATTTTCTTGGCATATTGTCAAAAGCTTATACGCAGGGTC
ACAAAATTTCTTTCCTCCTTCTTCTCACAATTACCAAATCAGGATAATCA
AACGTGCTTGTCTTGATAAGTTTGTAAGTAGTTCACATCATGATTTTTTA
AGTGCTCTCCATGCTTCTAGGACAGACCAGTAATCATAAGAGTCAGCAAA
ATTGCCAACTTATTCTAGATACTTAAAAAAAATTCATTCTTATATTTCTG
TTGCTCTAGGACCATTTCTCATACCAAATTCTGTATTAGTCAAGGTTCTG
TAGGGGAACAGAACTTACAGAATGTGTGTGTGTGT
TCCATGCTAGCGGAAGACTGAGGGACGCCTGGTTTCATACATTAGGGNGA
ACNANAGAAGTTTTCGAAAAATTCTGCTGCTNGCAGGAGTTGGAACATGG
CCTCCTTGTTCATCAGTGCCCTGCATGCAGCCCTTCTGTGAAGAAAGAGA
GCTGTCATACTTGTGTGTGCCCAATCTGGTATTTTTATATATGTCTCTGG
AACCCTGGGCTCTCATACCCACCTGGTGAGTGTACTTGTTGGATTCTATT
TTTAGGACTGTGGTCCAAAAACTCAATGTATAGTAGTTATATGGTTCTTG
TAGCTGTAGAACTATTTCTCGGTTCCACAGGCCAATATGCGGGGCTGGNT
AGCACATTTGTTATAAACTAAACTGATTTTATCTTCTAGCCCTTTGTTTT
CTCTCTTCAGAAAAGGAATACCTAATTTCTTAACCACAGGAAGACTACAG
TGGCCATGTGTGAAATGAATAAAGGTCTTTAACTTATGGTAGTTTGCACC
ATCAGTTACTAATTTTGCATGCACTGACATTGACTCTATGCACCTTTCAA
AGTCACCTAACAGCCAAAACTTTTCTTATTACATAAATAATTATGCTTTT
TCCCCCCTTCTCAATTCTCTCCTCTTTTTCCTAAATTCTCCCGGTTTCAA
CTTATTTTTTCATCTAAGCAATTTATATTTATGTTTTATCTTTCCACACC
TTGCGTTTTATAATTAAAATCCACTTTCTGGTTCCTTTCGTCCTTCTCTA
TATTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p13.g1 MSMg01no464_p13.g1 CHROMAT_FILE:
MSMg01no464_p13.g1 PHD_FILE: MSMg01no464_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:54 2005
         (162 letters)



>mm_chr2_23413684_23414245
          Length = 562

 Score =  306 bits (158), Expect = 6e-88
 Identities = 161/162 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggagttggaacatggcctccttgttcatcagtgccctgcatgcagcccttctgtgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagttggaacatggcctccttgttcatcagtgccctgcatgcagcccttctgtgaag 260

                                                                       
Query: 61  aaagagagctgtcatacttgtgtgtgcccaatctggtatttttatatatgtctctggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagagagctgtcatacttgtgtgtgcccaatctggtatttttatatatgtctctggaac 320

                                                     
Query: 121 cctgggctctcatacccacctggtgagtgtacttgttggatt 162
           | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgggctctcatacccacctggtgagtgtacttgttggatt 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)