BAC Information

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BAC

Clone NameMSMg01-464P20
Chromosome2 (Build37)
Map Location 86,305,204 - 86,305,631
singlet/doubletsinglet
Overlap genenone
Upstream gene4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1
Downstream geneOlfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P20.T7 (MSMg01no464_p20.b1)MSMg01-464P20.TJ (MSMg01no464_p20.g1)
ACCAG549275AG549276
length813762
length of high quality
(start - end)		244 (74 - 317)444 (72 - 515)
definitionCHROMAT_FILE: MSMg01no464_p20.b1 PHD_FILE: MSMg01no464_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005CHROMAT_FILE: MSMg01no464_p20.g1 PHD_FILE: MSMg01no464_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAGTCCTAATGTCACNANACGANTCACTATAGTGCGAGGATCCGCGGAAT
TCTCTGTTNATCACTGTATACTAATTTTTTAACTGGGTTATTGGTTCTAT
TGGTATCTAACTTCTTGAGTTCTTTATACATTTTAGATATTAGTTCTCTG
TTGGATGTCAGTATATTCCATATATTTTGCTCTTTTGTGTTCTTATTTTT
ATTACATCTATTGTTTTTTATTTCTTTCTTAAATTTTCTTTTGCATGTTT
ATCTCTTAGTAACAAGTTGTTTAGTATAGAATACAGTTTATTCAGGGCAT
GGGGACGGTAGGTAAGAGGGTAGCAGAGGCAGAGAAAGGCAAAGAGAATG
AGAAAGTGGAGAGGGGGGAGGGAATTAGGAGTAAGGTGCTATTGGCTATA
CATACGTAAGAGCACTACCACCCCCCGAGTTAAATATTTTCCTCTCTTCC
TGCGCCGTCTTTACTCTACTTTATAGCTTCCACATTCACCTTCGCCACTG
TATCGACTTTCTGGCGTAATCCTTTTTGCCTGCCACCTTCATCTTTCCGA
CCTTCTCCTTTCTCCCTATTTTTTATCGTCCCTTCCCATTAACGTTTTTT
ACCTTCCTGCATCTTTTCCCTCTTTTTTCCTTGCCATACTCACGCCCCCT
GTTTTCTATTACAGTTTCCTATTTCCCTCTCTTTTCCCTCTTTCCTCTTC
TTCCCCTTTCCTTTTTTCACCCTCCACTTTCCATTTCTACTCCGTTTTTC
ACTTTCCCCGCCCCCACCTTCCTTTTTCGCCCTTCCTTATCCCCTCTTCC
TTCTTCTTCCCCG

TGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTCACCATTGTAAAGTTGTGACTCGCCAT
CAGGTTTATGATAAATTCTGTTTTGAGTGGAAATCATTGCACAGTCAATA
GATTTCAAGTACCATTTGGTGAGTTTTTATCATCTAAACGTGCTTAAATA
AATTATCTTCAAACATTCAAATTTATTTTGAAATATATTAAAATATGTAT
GTATCTTCTGTAATCTACACACACATACATGCAAACATGTGGTATGAAAT
ACACAATTATGAATATTTATTTTTGTTCCAATAATAACTTAAATCAGAGA
ATACCGTAATTAACTGCCAATGTTTGCTCTTCCTAACTGTATAGAGAGCA
GTCACTTTAATTCACTACTACACTATACATATATGCATATATATATATAT
ATATATATATATAAAACAAAGAATATCAAGTCTATAAATTGTAGACAGTT
ATCGATAGAACATTGATGAAATTTATTTTTCTGATATTTTTATTTCTGAC
ATGCTTACTAACACATATTAGCACTTAATGTTTATGTACTTGTGCTAATG
CAAAATATTTGCCTGTAATAGTACATATATGCTATAAAAATGTTTTACAA
ACGCTAATTACTTTCTTGTGTAGATTTATAACATATTTTCTTCTTTTTAT
TTTGTCGCTTTTAGATATATCCCCCTTGTTTTACATTTATCGCAATCTTA
CTATACTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p20.g1 MSMg01no464_p20.g1 CHROMAT_FILE:
MSMg01no464_p20.g1 PHD_FILE: MSMg01no464_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:55 2005
         (444 letters)



>mm_chr2_86305004_86305847
          Length = 844

 Score =  677 bits (350), Expect = 0.0
 Identities = 414/446 (92%), Gaps = 20/446 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaccattgtaaagttgtgactcgccatcaggtttatgataaattctgttttgagtgga 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gtcaccattgtaaagttgtgactcgccatcaggtttatgagaaattctgttttgagtgga 260

                                                                       
Query: 61  aatcattgcacagtcaatagatttcaagtaccatttggtgagtttttatcatctaaacgt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aatcattgcacagtcaatagatttcaagtgccatttggtgagtttttatcatctaaacgt 320

                                                                       
Query: 121 gcttaaataaattatcttcaaacattcaaatttattttgaaatatattaaaatatgtatg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 321 gcttaaataaattatcttcaaacattgaaatttattttgaaatatattaaaatatgtata 380

                                                                       
Query: 181 tatcttctgtaatctacacacacatacatgcaaacatgtggtatgaaatacacaattatg 240
           ||||||||||||||||||||||||  |||||||||||||| | |||||||||||||||||
Sbjct: 381 tatcttctgtaatctacacacaca--catgcaaacatgtgatgtgaaatacacaattatg 438

                                                                       
Query: 241 aatatttatttttgttccaataataacttaaatcagagaataccgtaattaactgccaat 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatatttagttttgttccaataataacttaaatcagagaataccgtaattaactgccaat 498

                                                                       
Query: 301 gtttgctcttcctaactgtatagagagcagtcactttaattcactactacactatacata 360
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
Sbjct: 499 gtttgctcttcccaactgtattgagagcagtcactttaattcactactacactata---- 554

                                                                       
Query: 361 tatgcatatatatatatat--atatatatatataaaacaaagaatatcaagtctataaat 418
                     |||||||||  |||||||||||| |  ||||||| ||||||| |||||||
Sbjct: 555 ----------tatatatatgcatatatatatatga--caaagaaaatcaagtatataaat 602

                                     
Query: 419 tgtagacagttatcgatagaacattg 444
           ||||||||||||||||||||||||||
Sbjct: 603 tgtagacagttatcgatagaacattg 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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