BAC Information

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BAC

Clone NameMSMg01-465A03
Chromosome2 (Build37)
Map Location 11,822,730 - 11,989,533
singlet/doubletdoublet
Overlap geneEG635919
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16
Downstream geneLOC667247, Itga8, 2310047O13Rik, LOC100040837, Pter, C1ql3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465A03.T7 (MSMg01no465_a03.b1)MSMg01-465A03.TJ (MSMg01no465_a03.g1)
ACCAG549289AG549290
length731732
length of high quality
(start - end)
562 (65 - 626)432 (72 - 503)
definitionCHROMAT_FILE: MSMg01no465_a03.b1 PHD_FILE: MSMg01no465_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:57 2005CHROMAT_FILE: MSMg01no465_a03.g1 PHD_FILE: MSMg01no465_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(11,988,972 - 11,989,533)(11,822,730 - 11,823,161)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATT
CCCACCTTCCCTAAGACCTGTCTGTCCTGAATATGTCATTGCAGAAGAGT
TTCCATTTGCAATTTAATCTCTCAGCCCTGGCTACATCTATGAACTCATC
CTGATTGCATCTATGCCATGGTGTCTCTGTTTAGAGGAGGTGGATAGAAA
AGAATCCATCTTTCATCCAGCCATAATGAGGTTATTTTTTAAAGGCATCT
GAGGCTTGGGACATGTCGTAGGGCACAGGTCAAAGGGTTTTGTATACAAT
CACTAAAATTCTTTCTATGCCTCTGGAGCTCAAACCACATGTTATTCTTG
CTATCTTACAAGGCTCACATGTCCCTGAAAGATGTGACCTCGGAAAAATC
CTTTTAATGAGGTGCTGACAGGAGCACTGTCTACTCCCTCCTCCCGAGCA
CAGTCCTCCCTCTTCAGAAATAGCATTTATATTTATCCTGGAAGATAATG
TTGTGCTGCAACACATGACCACAAAATTTAAATTTCAACTAAGCCTTTCA
TCTGTCTTCATCCCCATCACTGCCCTGCCTCTTTCGTCTCCATTTCTAAC
TCCATTCTAGTCAATCATTCTGCCTTTGGAGACCCAGACACCCAAGTCTC
TTCTAGACTCTTCTCTGAAGCTTCACTACTAAAGTATCTGTTTAAGCCAG
GGCATTTCCCTACCTGTGCTTCTTGGCTCCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATCCAATATGCCATCCTAGTCAGATGG
CACCTTGGTTTTTTTCCTTATCTGTGATTTCTGCCATGAACACATGAAGT
TTCTTGGAAAGGGCCAGATTATGAATATGGTACATGTAATAATTCTCAAA
CATATTTGTTTTGTATTTTGATATACTCTCTAAACACCCAATCCCTTTAG
ATTTATAAAACAACTGTTAATGAAAAACTGAAGGTTTGTTAATTAATCAG
TTTATTATATACACAAAAATAATTAGACATCATTATTTTAGCTGCAGTTT
TCTGAAAATGTTATAGAATATGTTTATCACAAATGCAGGCTTGCTTTCTT
TCCATTTATAGTAGTTTTTCAAGAGGTTTAATGACTGCAGTCATAATAGT
CAGCAGGAAAGTATAACTTTAAAAGTGAAAAGCTGTCCATTTAATTGGTT
ATTGGCTGTTGTTCTGCTGTATATTGCTTTTATTATGTTTAGGAATGGGT
GTTGAATTCCTGATTTCTTCAATACTTTTTAACTGAACGGATGGAATTTG
GCTAACGTTTTTTTTATAACCTACGGTCATATATTTTGAATTTTTCTTAT
TTTCCACTCCTCGCCGGCTAACCGTTTCTTTTTTTTCTTTGTATTATCGC
TCGCTCCTCCCCCCTATTCCTTTTCTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_a03.b1 MSMg01no465_a03.b1 CHROMAT_FILE:
MSMg01no465_a03.b1 PHD_FILE: MSMg01no465_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:57 2005
         (562 letters)



>mm_chr2_11988772_11989733
          Length = 962

 Score = 1040 bits (538), Expect = 0.0
 Identities = 556/562 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacctgtctgtcctgaatatgtcattgcagaagagtttccatttgcaatttaatctctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gacctgtctgtcctgaatatgtcattgcagaagagtttccatttgcaatttaatctctca 703

                                                                       
Query: 61  gccctggctacatctatgaactcatcctgattgcatctatgccatggtgtctctgtttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gccctggctacatctatgaactcatcctgattgcatctatgccatggtgtctctgtttag 643

                                                                       
Query: 121 aggaggtggatagaaaagaatccatctttcatccagccataatgaggttattttttaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aggaggtggatagaaaagaatccatctttcatccagccataatgaggttattttttaaag 583

                                                                       
Query: 181 gcatctgaggcttgggacatgtcgtagggcacaggtcaaagggttttgtatacaatcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gcatctgaggcttgggacatgtcgtagggcacaggtcaaagggttttgtatacaatcact 523

                                                                       
Query: 241 aaaattctttctatgcctctggagctcaaaccacatgttattcttgctatcttacaaggc 300
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 522 aaaattctttcaatgcctctggagctcaaaccacatgttatccttgctatcttacaaggc 463

                                                                       
Query: 301 tcacatgtccctgaaagatgtgacctcggaaaaatccttttaatgaggtgctgacaggag 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcacatgcccctgaaagatgtgacctcggaaaaatccttttaatgaggtgctgacaggag 403

                                                                       
Query: 361 cactgtctactccctcctcccgagcacagtcctccctcttcagaaatagcatttatattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cactgtctactccctcctcccgagcacagtcctccctcttcagaaatagcatttatattt 343

                                                                       
Query: 421 atcctggaagataatgttgtgctgcaacacatgaccacaaaatttaaatttcaactaagc 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 342 atcctggaagataatgttgtgctgcaacacatgaccataaaatttaaatttcaactaagc 283

                                                                       
Query: 481 ctttcatctgtcttcatccccatcactgccctgcctctttcgtctccatttctaactcca 540
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 282 ctttcatctgtcttcatacccatcactgctctgcctctttcgtctccatttctaactcca 223

                                 
Query: 541 ttctagtcaatcattctgcctt 562
           ||||||||||||||||||||||
Sbjct: 222 ttctagtcaatcattctgcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no465_a03.g1 MSMg01no465_a03.g1 CHROMAT_FILE:
MSMg01no465_a03.g1 PHD_FILE: MSMg01no465_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:57 2005
         (432 letters)



>mm_chr2_11822530_11823361
          Length = 832

 Score =  828 bits (428), Expect = 0.0
 Identities = 431/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatccaatatgccatcctagtcagatggcaccttggtttttttccttatctgtgatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatccaatatgccatcctagtcagatggcaccttggtttttttccttatctgtgatttc 260

                                                                       
Query: 61  tgccatgaacacatgaagtttcttggaaagggccagattatgaatatggtacatgtaata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgccatgaacacatgaagtttcttggaaagggccagattatgaatatggtacatataata 320

                                                                       
Query: 121 attctcaaacatatttgttttgtattttgatatactctctaaacacccaatccctttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctcaaacatatttgttttgtattttgatatactctctaaacacccaatccctttaga 380

                                                                       
Query: 181 tttataaaacaactgttaatgaaaaactgaaggtttgttaattaatcagtttattatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttataaaacaactgttaatgaaaaactgaaggtttgttaattaatcagtttattatata 440

                                                                       
Query: 241 cacaaaaataattagacatcattattttagctgcagttttctgaaaatgttatagaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaaaaataattagacatcattattttagctgcagttttctgaaaatgttatagaatat 500

                                                                       
Query: 301 gtttatcacaaatgcaggcttgctttctttccatttatagtagtttttcaagaggtttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttatcacaaatgcaggcttgctttctttccatttatagtagtttttcaagaggtttaa 560

                                                                       
Query: 361 tgactgcagtcataatagtcagcaggaaagtataactttaaaagtgaaaagctgtccatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgactgcagtcataatagtcagcaggaaagtataactttaaaagtgaaaagctgtccatt 620

                       
Query: 421 taattggttatt 432
           ||||||||||||
Sbjct: 621 taattggttatt 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)