BAC Information

Click to search

BAC

Clone NameMSMg01-465D03
Chromosome2 (Build37)
Map Location 162,272,012 - 162,272,343
singlet/doubletsinglet
Overlap genePtprt
Upstream geneLOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465D03.T7 (MSMg01no465_d03.b1)MSMg01-465D03.TJ (MSMg01no465_d03.g1)
ACCAG549432AG549433
length1,106745
length of high quality
(start - end)
---329 (69 - 397)
definitionCHROMAT_FILE: MSMg01no465_d03.b1 PHD_FILE: MSMg01no465_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:12 2005CHROMAT_FILE: MSMg01no465_d03.g1 PHD_FILE: MSMg01no465_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTTTTTGTTTTTATTAAATCAATTATTATTATTATTTTTTTTCCCG
CCCGGCTCTTCCCACCGATAATTTCTGTCTTCTTGTCTCGTCTTACATCC
TGTCTATCAATTCCGCCCGACACATATATACTTTTTATTTTTCGGTTATT
TCATATAATACATTTTTTTATTAATAATACATTCTAAACCATGAATAAAT
CGTTTTCTCTTCTCTCGCCCCCCCCCCCACTTTTTTATTCATTTTTATTC
TATCACCACCCACTTTTCCACCTCTTAGTTCTTTCATCTCCTACCCTCAT
ATCCTTTTTCCCTTTGTCTAATTTTCCCCACTCCCACTAAAAAACCTCTA
TATATGAACCTTCCACTCTCTTACTTCTATGCACTTACACTACTTAATAC
ATGTATTACTCCGAATACATAAACCTCCCCCTTGTTCTTTCTCCTACTTT
CTCAATATAACTAACACAACATATAAACCATATGAAAACCTACACTTAAA
ACCCACAATCCTAACCAACCAACAAACACACACCACTAATCACTTCCACC
CACTACACATGTAATAGTCACACTAAATACTATTAAATACTAATCACATT
TAATCTCCAGACCATTTCATAAACCATCCACAATAATCACCTTTTCTTAT
AACTTATCCCTTTCATAACATATTTACCCAATTCTTATTAATCCACACAT
AAAAATCATATTATATTTCCTAACCACAATCGTTACCATATCATATTATC
AAACACCATAACTCACCTTCCCCCGTAATAATCTCTCTATAACATAACAT
TAATACACCATATTTCTACCACAATATCTCACTTATATATCACCCGCCAC
TTCATATTCCTATTATTAAACAACACACACCTCTCCACTCATCATCCTTC
AAGACCTTCACCAATTATTATCTTTAACAACAAAACATAGATGTTTTNNN
NNNCCTCTACCCCTAGAACACCANTTCCTCCCAGCTTCTCCCCCTTCTCT
AATATAACACTCAACACCTTCTTAACTTTTCCAACACATCATAATATATT
TGTTTAATTCTATTAACAACTCATCAATACAAAACATACCAATTAAAATC
AACGCG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTAACCTCTCTGAGTCGGCTTCCTCAACCAT
AAAATGAGCTAAATGAGTTCTCAACTTCATCTCTATAGTTGCTGTGACTG
ATTGTATTTTTTTTTGAATGTATTTCTGAATTCAGATTTACTGAATTCTT
TAAGGAAGGCAACATACCTATCACATCCAGTAAATAACATTCCAGCCAGG
GCTGGATGGTGCTCTCAAATCAAGTACACCTGTATTTTGAAGCAAGAAGC
GTGAACATGCTGTTTTGTTCTACACATGTGTAGTTCCTGCATTTAGGAGG
CATTTAGGAGGATGGTAAAGTTGAGATTAACCTGCAGGATGACACCCTAT
ATTATAAAAAATTTAAATAAATAAATATTTTTAAGTATATCATGGGTATA
AATGAAATCTTTGCAGCAAATAGATTTTTATCAAACTTTAAAAAGAAATC
TTTGACGTTTAACCCCTTGGCCGATTTTGTAGTTCTTAAAAATGCTCCAT
ATTTCTGCATTTGATTCCTGAGTACTTTTTTTGCTTTGTGCTCCACCTCC
ATTGCTTTTTTGACCTATTTTCCGTTCTTTCATGGTAAAATTGTTAGTCT
TTTTTCCCACTATTTCTTTTGTCATTGCTTTCTATTTTTTTCCTCTTTCT
TCTCACCCCGCCCCTCACCCCCTCTTTTATCTTTCCCCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_d03.g1 MSMg01no465_d03.g1 CHROMAT_FILE:
MSMg01no465_d03.g1 PHD_FILE: MSMg01no465_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:12 2005
         (329 letters)



>mm_chr2_162271772_162272503
          Length = 732

 Score =  603 bits (312), Expect = e-177
 Identities = 326/332 (98%), Gaps = 3/332 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaacctctctgagtcggcttcctcaaccataaaatgagctaaatgagttctcaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cttaacctctctgagtcggcttcctcaaccataaaatgagctaaatgagttctcaacttc 513

                                                                       
Query: 61  atctctatagttgctgtgactgattgta---tttttttttgaatgtatttctgaattcag 117
           ||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||
Sbjct: 512 atctctatagttgctgtgactgattgtatttttttttttttaatgtatttctgaattcag 453

                                                                       
Query: 118 atttactgaattctttaaggaaggcaacatacctatcacatccagtaaataacattccag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atttactgaattctttaaggaaggcaacatacctatcacatccagtaaataacattccag 393

                                                                       
Query: 178 ccagggctggatggtgctctcaaatcaagtacacctgtattttgaagcaagaagcgtgaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ccagggctggatggtgctctcaaatcaagtacacctgtattttgaagcaagaagcgtgaa 333

                                                                       
Query: 238 catgctgttttgttctacacatgtgtagttcctgcatttaggaggcatttaggaggatgg 297
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 catgctgcgttgttctacacatgtgtagttcctgcatttaggaggcatttaggaggatgg 273

                                           
Query: 298 taaagttgagattaacctgcaggatgacaccc 329
           ||||||||||||||||||||||||||||||||
Sbjct: 272 taaagttgagattaacctgcaggatgacaccc 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 732
Length adjustment: 9
Effective length of query: 320
Effective length of database: 723
Effective search space:   231360
Effective search space used:   231360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)