BAC Information

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BAC

Clone NameMSMg01-465I02
Chromosome2 (Build37)
Map Location 78,107,696 - 78,107,998
singlet/doubletsinglet
Overlap geneOTTMUSG00000016703
Upstream geneLOC623706, LOC667906, Zfp533, BC003993, LOC667920
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465I02.T7 (MSMg01no465_i02.b1)MSMg01-465I02.TJ (MSMg01no465_i02.g1)
ACCAG549669AG549670
length848750
length of high quality
(start - end)
---408 (75 - 482)
definitionCHROMAT_FILE: MSMg01no465_i02.b1 PHD_FILE: MSMg01no465_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005CHROMAT_FILE: MSMg01no465_i02.g1 PHD_FILE: MSMg01no465_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTAAACACNCACTATTTCAATACAATCCGNCNNAANNNCTTTGTT
TTCCTCTCACCCCCATTTTTTAATGNNNTTATTTGATTTTCTGAANTTCA
CCTTCTTCAGCCTCTTTAAATAATCTCGAATATTACNCCCCTAATCAAAT
TTACGAAAGGTAAAGATCCTTTCCCAATCCTANNGNNGGNCTTTTTTCTT
NTACTAACACCNNNATTTGCCTTCTTAACGATTAAAATNNNCCTAANTCC
CATTNTTTCAATTCCCAATTTTAAACAAAAACAAATANCTTTCTCGGCTA
TTAATCTNNNNNTTTTTTTTTTTTTTCTTTTTCGANNTTTCCCCAGGTTN
NNCCCCTTTTAATNNCCCCCCTTTAAAATAANNACCCCCCCCNCCCGGCC
GGGAGGGAGTGACGTGCGCGGGGGAGGAAAAGGGGGTGAAAATNTCTTTT
TTTTATAATATTTTATAAAGAATATCCCNCCCCAACCAACCATATAAAAA
TCTTTTTTTCTGCCTCCCCCACAATCCTCCAATATACCCCTTTATAAATA
TTATCTCTAATAATTACANCCCTGGCCCTATCTTTTCTTTCACCTTCTTC
CCCCCCTTAATATTTATTATTTTTTACNAACCCACCCCTACATTTCTTCA
CTTTACCCCCCCCCCGCNCCCNNNNCACCCCNCCCCCCCACCTCCCTCTT
CAACCAATCCCCCCACTCCAACCTACACACTACACCCCCCCCCCCTCCCC
CCCACTATAAATTATCACTNTATCATTTTCCTTCTTCCCCACACTGGNNA
NCCCCCACCCATCCCAAAAAAACATACTACTTTATCTTTACTTTATAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCCTCCTGGTACTGAAAACTGTAC
CTAAATGGCATGTATCCCCTCTTAACACAAGCTTGGCACGAGGGGGCAAC
AGCCTCAGAGAGATTTGCAAAAGCGCAAGTACTCCTCACAGTTGGCAAGC
CATAGGATCTGCCCAGCTGTCTGTGAACAGATGAGGGTGAAGCAAATGTG
CCTACATACACAATGGAGTTTTATTCAACCATGAATAGTAAGGAAATTAC
CTTGTTTATATGAATATGGGTGGATGTCAAAATTATGTTACTCTACATGA
ATCAAACTCAAGCTAATTTCAAACTTCCTTTCTATGTAGACCCTGGATTT
CTTATACATGTATACATGTATACCATACATATATACATATTGTGTGTGTG
TGTGAATGACATGATAGCACACATAGGACTAACTGGGATAAGAAAGAGGA
CTGGCCTACGATAAATGAAAGAAAGGAGCTCGCTTTTTTAATCATATTCC
CTCTTGTTCCATCTATTTATTTCTTCCCCCCCCCCCCAACACAACTCCTT
CTTTACTCTCATCCTTCCCTTTCTCATGTGTTTTCCCCTACCCCACTATA
TCCGTTACGTTTTCACACAGCAATACGCTATATCATCTTTTTTCTTTCTC
CTCCCGCTTTTTTTCTTCCCATTTTTACTTTTTTTTCCAACCATTCTTCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_i02.g1 MSMg01no465_i02.g1 CHROMAT_FILE:
MSMg01no465_i02.g1 PHD_FILE: MSMg01no465_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:38 2005
         (408 letters)



>mm_chr2_78107696_78108503
          Length = 808

 Score =  555 bits (287), Expect = e-162
 Identities = 299/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcctcctggtactgaaaactgtacctaaatggcatgtatcccctcttaacacaagctt 60
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 catcctcttggtattgaaaactgtacctaaatggcatgtatcccctcttaacacaagctt 244

                                                                       
Query: 61  ggcacgagggggcaacagcctcagagagatttgcaaaagcgcaagtactcctcacagttg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggcaccagggggcaacagcctcagagagatttgcaaaagcgcaagtactcctcacagttg 184

                                                                       
Query: 121 gcaagccataggatctgcccagctgtctgtgaacagatgagggtgaagcaaatgtgccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gcaagccataggatctgcccagctgtctgtgaacagatgagggtgaagcaaatgtgccta 124

                                                                       
Query: 181 catacacaatggagttttattcaaccatgaatagtaaggaaattaccttgtttatatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 123 catacacaatggagttttattcaaccatgaatagtaaggaaattatcttgtttatatgaa 64

                                                                       
Query: 241 tatgggtggatgtcaaaattatgttactctacatgaatcaaactcaagctaatttcaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tatgggtggatgtcaaaattatgttactctacatgaatcaaactcaagctaatttcaaac 4

              
Query: 301 ttc 303
           |||
Sbjct: 3   ttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)