TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTATTCTCGTTCCCAGTCTTTGTAGTTTAGATGTCAAACTCCTTTTA
GGCAGATAATATACTTTGTTTCTTTTGATTATCCTTTATTATTCTCCGTA
AAAACCCAACACCAGTTAGAGTCACAGTAGGAAATATGACAATTACTGTA
TATTTGTGTTTGGTCTTAAGTGGATAGCTCTGAGACCAAATAGTGAGTAA
TTTAGGTTTGGCAGACAATAAAATCTCTTGAATCCTCTCACCTCTTCCAT
GAGTAGACCTTGTTTTTGGCACTAATGGTTGAGCACAGCTTTGCTAGAAG
CTGAAATTTAATTTCAAATACTTTTTATATGTTACATCATGGTCTTCCTT
TTCCTTTGAGCCATTTAAAAGTGCCAGTTATGTGGCACTTCTTTGTGTTG
CCCCACAGAAGTAAGTGGCAGCTGGAGGGTTACACAGCTGTCAGCCTGTG
TGGNGGACTCTTCTATCTTTCTCTGTTCTATATACTTTATATTCTAAAAC
CCTTCAAGGTCTTAGTATGGTCATGCTCCTCACTGTCTCCAGTGTTTATT
TATATTAGTTTAAAAAAAACTATTGTTTGAGAGCAACTTTTGAAAAAATA
TTACTAAAGGTGTCCTCTTGAAGCAGACTCCTGCTGTAGTTATGATCCTG
CGTATATAATACCTCCCG

ATGAAGTGGGAGGCCTGGNGGNCGCCGGTCAGAGAGAGGTAGGTGAACTA
TAGATTGCTAAAAGAGAATCTTTCACCTCTTGTTGTCAGACAAACCCAAT
AGAATACAAGGTCACAAGGGCCTATACTTCTAAAGATTGAAAGATTCTTT
TTCAAGTAAGCACATAAATTATTTGATTTTATCATTATATTCCTCAGGAA
CTTCGCTCTAACTATAATGCACTGCTTTTGATATATAAAAGTATAACTGG
AAGGTGGGGTGGGTTGGGGATCGTCTTGTCTCATTTGGCTAAGCCTGTCA
GCATGTTTTAGTGCGTCTAACAGACCATAACATCCCCTGATATCCCCAAT
TTATTTCCCCCCCTTTTCTAATAAGCAAATTGTGTATTCTCGTGTATTCT
AGGATAGAGCGACCATATCTTTTGGTTAGTCGTGTGTTCTTTACACTTTG
TATGTTTACTCCGCTCTTTTTGATTCTTCGTTTAATATATATCGACGTCT
ACATCTTGTTTTTTTCTTTCCTGCTCGCTGTTTTTTATGTATCATACTCG
TTTCACTTTATTTTTTATATCCTCCTACTCACCATCATAACTATTTTCTT
GTTATTATTACCCCTACTTTCCCCTCCTTTTCCCCCCACGCAACTTTTCC
TTCAGCCTTTTTTTTTTCTTACTGTAAATACCTCTTTCTTGATCACCCCC
CCGCTCTTTTTCCATCCCCATCCGTACGATCAAGTGCCGACCATTCTCT

Query= MSMg01no465_o08.b1 MSMg01no465_o08.b1 CHROMAT_FILE:
MSMg01no465_o08.b1 PHD_FILE: MSMg01no465_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:10 2005
         (541 letters)



>mm_chr2_105746165_105747105
          Length = 941

 Score =  955 bits (494), Expect = 0.0
 Identities = 529/545 (97%), Gaps = 8/545 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtctttgtagtttagatgtcaaactccttttaggcagataatatactttgtttctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtctttgtagtttagatgtcaaactccttttaggcagataatatactttgtttctttt 260

                                                                       
Query: 61  gattatcctttattattctccgtaaaaacccaacaccagttagagtcacagtaggaaata 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattatcctttattattctccataaaaacccaacaccagttagagtcacagtaggaaata 320

                                                                       
Query: 121 tgacaattactgtatatttgtgtttggtcttaagtggatagctctgagaccaaatagtga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgacaattactgtatatttgtgtttggtcttaagtggatagctctgagaccaaatagtaa 380

                                                                       
Query: 181 gtaatttaggtttggcagacaataaaatctcttgaatcctctcacctcttccatgagtag 240
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| 
Sbjct: 381 gtaatttaggtttggcagacaataaaatctcttgaatcttctcatctcttccatgagtaa 440

                                                                       
Query: 241 accttg----tttttggcactaatggttgagcacagctttgctagaagctgaaatttaat 296
           ||| ||        ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatgagac----tggcattaatggttgagcacagctttgctagaagctgaaatttaat 496

                                                                       
Query: 297 ttcaaatactttttatatgttacatcatggtcttccttttcctttgagccatttaaaagt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttcaaatactttttatatgttacatcatggtcttccttttcctttgagccatttaaaagt 556

                                                                       
Query: 357 gccagttatgtggcacttctttgtgttgccccacagaagtaagtggcagctggagggtta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gccagttatgtggcacttctttgtgttgccccacagaagtaagtggcagctggagggtta 616

                                                                       
Query: 417 cacagctgtcagcctgtgtggnggactcttctatctttctctgttctatatactttatat 476
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cacagctgtcagcctgtgtggtggactcttctatctttctctgttctatatactttatat 676

                                                                       
Query: 477 tctaaaacccttcaaggtcttagtatggtcatgctcctcactgtctccagtgtttattta 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctaaaacccttcaaggtcttagtatggtcatgctcctcactgtctccagtgtttattta 736

                
Query: 537 tatta 541
           |||||
Sbjct: 737 tatta 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no465_o08.g1 MSMg01no465_o08.g1 CHROMAT_FILE:
MSMg01no465_o08.g1 PHD_FILE: MSMg01no465_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:10 2005
         (227 letters)



>mm_chr2_105813741_105814367
          Length = 627

 Score =  420 bits (217), Expect = e-122
 Identities = 223/225 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttcacctcttgttgtcagacaaacccaatagaatacaaggtcacaagggcctatact 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 tctttcacctcttgttgtcagacaaacccaatagaatacaaggtcagaagggcctatact 366

                                                                       
Query: 61  tctaaagattgaaagattctttttcaagtaagcacataaattatttgattttatcattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctaaagattgaaagattctttttcaagtaagcacataaattatttgattttatcattat 306

                                                                       
Query: 121 attcctcaggaacttcgctctaactataatgcactgcttttgatatataaaagtataact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 305 attcctcaggaacttcgctctaactataatgcactgcttttgatatataaaagtaaaact 246

                                                        
Query: 181 ggaaggtggggtgggttggggatcgtcttgtctcatttggctaag 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggaaggtggggtgggttggggatcgtcttgtctcatttggctaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)