Query= MSMg01no465_p18.b1 MSMg01no465_p18.b1 CHROMAT_FILE:
MSMg01no465_p18.b1 PHD_FILE: MSMg01no465_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:17 2005
(479 letters)
>mm_chr2_124338138_124339016
Length = 879
Score = 721 bits (373), Expect = 0.0
Identities = 394/401 (98%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 1 tatgattaaatattacatatcaatttggtgattatatgcctatgtttttcttcacagcat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 401 tatgattaaatattacatatcaatttgatgattatatgcctatgtttttcttcacagcat 342
Query: 61 tgataaaaaatgacacactctctgcagaaaagtgtttgatacagcttcccaggtcagtgt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgataaaaaatgacacagtctctgcagaaaagtgtttgatacagcttcccaggtcagtgt 282
Query: 121 cattcataactctttctgtcttgttcctttaggctaaaactgtgcaaggaggtaaaatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cattcataactctttctgtcttgttcctttaggctaaaactgtgcaaggaggtaaaatag 222
Query: 181 atgcaacagagtgggtaaatgcagtcagtctttcagatccaca-attctgcagccacgtg 239
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 221 atgcaacagcgtgggtaaatgcagtcagtctttcagatccacagattctgcagccacgtg 162
Query: 240 tttaaccaaacatacactgaaatcaattctttaaaaaagactgtgctttttctgaatata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tttaaccaaacatacactgaaatcaattctttaaaaaagactgtgctttttctgaatata 102
Query: 300 tacagcttttttttgctgttgttcctaagaaatacagactaacaactatttacatgtagc 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tacaacttttttttgctgttgttcctaagaaatacagactaacaactatttacatgtagc 42
Query: 360 atttataaatgattttagatgttgtaagtaatttcataatg 400
||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 41 atttataaatgatattaaatgttgtaagtaatttcataatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_p18.g1 MSMg01no465_p18.g1 CHROMAT_FILE:
MSMg01no465_p18.g1 PHD_FILE: MSMg01no465_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:17 2005
(410 letters)
>mm_chr2_124180732_124181541
Length = 810
Score = 731 bits (378), Expect = 0.0
Identities = 402/414 (97%), Gaps = 8/414 (1%)
Strand = Plus / Plus
Query: 1 aagatcggagctatggcccctgaaggcctgggggcggggggacctgtgtcttgcctcctc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagatcggagctgtggcccctgaaggcctgggggcggggggacctgtgtcttgcctcctc 260
Query: 61 ttgcttccagagtttccagtctcggcctgccttgttctgcatcacttcgttcttcgcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcttccagagtttccagtctcggcctgccttgttctgcatcacttcgttcttcgcctg 320
Query: 121 tggcatcacatcacactgcctcctcttctgtgttttccacattccattgacccttacaaa 180
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 321 tggcatcacatcacactgcctcctcttctgtgttttccacattccactgatccttacaaa 380
Query: 181 gacatttgtaattgactttatacctcagcagtgtattctggaactgggtactcctggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatttgtaattgactttatacctcagcagtgtattctggaactgggtactcctggcct 440
Query: 241 gttttt----cttgttctcctgtgccctcccttaacttaggcctgccttttgcccagact 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gt----accccttgttctcctgtgccctcccttaacttaggcctgccttttgcccagact 496
Query: 297 ctctcgggttatggggatttggtctggcatctcttgggtaaagtgccatcattcagacca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctctcgggttatggggatttggtctggcatctcttgggtaaagtgccatcattcagacca 556
Query: 357 tgcagttttcaacctgtttgaactagagaggcttgtctctaagatgaaaatgat 410
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 557 tgcagttttcaacctgtttgaactagagaggcttgtctctaagatgaatatgat 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
