Query= MSMg01no466_a11.b1 MSMg01no466_a11.b1 CHROMAT_FILE:
MSMg01no466_a11.b1 PHD_FILE: MSMg01no466_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:21 2005
(639 letters)
>mm_chr2_67222013_67223051
Length = 1039
Score = 1191 bits (616), Expect = 0.0
Identities = 634/640 (99%), Gaps = 2/640 (0%)
Strand = Plus / Plus
Query: 1 accagaagcagaacagcccaccatggataggtttagtccagtcgatataaagcatcataa 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagaagcagaacagaccaccatggataggtttagtccagtcgatataaagcatcataa 260
Query: 61 aaatttttatgacttcgtttagctttgatgctctaagtctaacttctaaatgtcttatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttttatgacttcgtttagctttgatgctctaagtctaacttctaaatgtcttatca 320
Query: 121 aagcatgggtaaatgagcaatgggccagataggggtttgtgtctgttaaaacgttgggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aagcatgggtaaatgagcaatgggccagataggggtttgtgtctgttaaaacggtgggtg 380
Query: 181 ttacagaatacaaatgaggcattcatcctgatttctgtacctaagaattatatttgt-tn 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ttacagaatacaaatgaggcattcatcctgatttctgtacctaagaattatatttgtct- 439
Query: 240 atttttcttgattctgtctttggatgccatgtggattgatctttgtgcttgatctttgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttttcttgattctgtctttggatgccatgtggattgatctttgtgcttgatctttgtt 499
Query: 300 aactgctgtggtgggacatgaggggcagaaagccctgagaggcataatcagaatgagaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aactgctgtggtgggacatgaggggcagaaagccctgagaggcataatcagaatgagaaa 559
Query: 360 agtagacattaaggagttaacttccctgtcatcccatcccattctgttgaaagctgtatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtagacattaaggagttaacttccctgtcatcccatcccattctgttgaaagctgtatt 619
Query: 420 gtttcagtaagttaccctcaaaaaacaaaataaagtgtagaatctcattacatcaggtta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtttcagtaagttaccctcaaaaaacaaaataaagtgtagaatctcattacatcaggtta 679
Query: 480 aatgtcttcttcccttatagccttggacaaattatttaaattacttaaactccctggcct 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatgtcttcttaccttatagccttggacaaattatttaaattacttaaactccctggcct 739
Query: 540 tgttttctttttattgtaattacggacagcctagttagcattattaaacctactacataa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgttttctttttattgtaattacggacagcctagttagcattattaaacctactacataa 799
Query: 600 aaagtgtatatgcagagcagaacatgtggtacacattcaa 639
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaattgtatatgcagagcagaacatgtggtacacattcaa 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_a11.g1 MSMg01no466_a11.g1 CHROMAT_FILE:
MSMg01no466_a11.g1 PHD_FILE: MSMg01no466_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:22 2005
(468 letters)
>mm_chr2_67398034_67398904
Length = 871
Score = 812 bits (420), Expect = 0.0
Identities = 453/464 (97%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 1 tctgggtattttagagtgattagagagtgtgtctggaggataatcatgcttgcctcggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tctgggtattttagagtgattagagagtgtgtctggaggataatcatgcttgcctcggga 605
Query: 61 gaaaagtgctaataaaaggtcaaagctgagtccctagggacttgggctcctgaagctaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaaaagtgctaataaaaggtcaaagctgagtccctagggacttgggctcctgaagctaat 545
Query: 121 agcatgaatcatcattagcttttcctggtgacaagtcatgcaagtctgtgaagttcatac 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 544 agcatgaatcatcattagcttttcctggtgccaagtcatgcaagtctgtgaagttcatac 485
Query: 181 agagagagaaatttagatcagtaggactttatgctaccatgcagttt-ataattacttta 239
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 484 agagagagaaatttagatcaataggactttatgctaccatgcagtttgataattacttta 425
Query: 240 cagaaatcaagtttgaaaacctttttt-gtcttaagaatttttctctctgctctaaaagc 298
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 424 cagaaatcaagtttgaaaagctttttttgtcttaagaatttttctctctgctctaaaagc 365
Query: 299 ctcctctccaagtgacttgatacctataagggaagaaaaacctactgagttctccttcag 358
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 364 ctcctctccaagtgacttgatacctgtacgggaagaaaaacctactgagttctccttcag 305
Query: 359 ccaattccttttctgttgtttgccttattaaggtggaggttgcccacatgcaaatt-act 417
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 304 ccagttccttttctgttgtttcccttattaaggtggaggttgcccacatgcaaatttact 245
Query: 418 ttccagaaagaatatattgtatattttaagaagccttatgtttt 461
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 ttccagaaagaatatgttgtatattttaagaagccttatgtttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 871
Length adjustment: 10
Effective length of query: 458
Effective length of database: 861
Effective search space: 394338
Effective search space used: 394338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
