BAC Information

Click to search

BAC

Clone NameMSMg01-466B21
Chromosome2 (Build37)
Map Location 29,246,404 - 29,246,859
singlet/doubletsinglet
Overlap geneCrsp8
Upstream geneGm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2
Downstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466B21.T7 (MSMg01no466_b21.b1)MSMg01-466B21.TJ (MSMg01no466_b21.g1)
ACCAG550138AG550139
length755810
length of high quality
(start - end)
456 (75 - 530)283 (83 - 365)
definitionCHROMAT_FILE: MSMg01no466_b21.b1 PHD_FILE: MSMg01no466_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:29 2005CHROMAT_FILE: MSMg01no466_b21.g1 PHD_FILE: MSMg01no466_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACC
GCGGAATTCTGGGATCTTCCGGTCAGCTGCATGTGGCAAAGTGTTCCTCT
AGTGAGGATCTGCCATCTTTACAGTTTTCTTAAACTTCTTATTTCAGATA
TGTTTCCAGCTTCTAGAAATGTCCCCAGCAGTTCGTGCAGAGCTCTGTGG
ACTCCACCCATGTCCCCTCTCCTCCTGTTGCTTGGTGGTGTTGCTGTCTG
AGTTAGGATTTCTGCTAAGAAATGGGATGGTCCATAACCGCTTTTTCTTT
GATGCTAGAGTACAACGTTGCTCTTATCGCTACCTACTGCTCCCAAGCAT
GCTGTCTGGAAAGGCCAGAATTTTCTTTCCTTCTGTCTCATTCTTGTTTG
GGTTTTTCTTTCACTTTGCTATGCTGGTAATCAGATCCAGGGCCTTGGGC
ATGCAAGGCAAGTGAGCCAAGCCACACCCTCAGCTCAGCTGGTTCCTTTT
CCAGCACTTGCTCAGGATCCACTCTTGGGCCTACCATGATCAGTTCTCCA
CCGAGGAAGTTCAGGTCAGCTCCTGCTTCTTGTGTTTGCATAACTGCTTA
ACTGAAAGTAATGGAATGAAAGCCCATAACCAAGTAACTTTTCCAGGAAG
TGTTTTGACCCCCTTTTTTTTTTTGGGGTGCCATTTTTTTTTGTCTTATC
ACAGAAAGCTTGTCTTGTGTTAAATTCCGGTTTTTTATATTCTTGTTTTC
TTTTN
AAACCACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCAATGATCCTCTCA
TTCTCTCTTGTGTGGGGGCAGAGGGTCTGGGGAGAGAGTTCAAAGCTCTG
GAGAAGTTAGAAAAATAAATCCTAATGGTCACACTCGGCCCGCTCCTTGT
TGCTTTTGGAAATAAAACTTTATTGGAACATGGTGATGTCCATTCCTCTT
ATAATATTTATGGCTTCTGATTTTTTTTTGTCACGGTGATAGAAATGGGC
AGCTGCTGCTACCTAGCTGGCCTAGTTTATGGTGTTCCTTCCTGTCTGGT
GTTACTCTGGGGGATGTTGGGAGTAGTATTTTCTCCGCGCCCGTCTTTTC
TTCTTTTCTTTTTTTCTTTTTTATTCCTCTCTTCTTGCCCTCTCTTCGCT
ACTTTTTCTCATTTATTCTCTTTTCATCATTTTTCTTCTATCTTCTTTTT
TTTCTATTTCTTCTCCTTTTTTTCTTTTTTTCTATTTTTTTTTTTTTTAT
TTTCCTCATCATTTCCTACTCCCTCTTTTTTTTTCATTTTTTTTTTCTCT
AACCCCTCCCATATATCCCCTTATTATCTTTTATATTTTTCCCTTCTTTT
CTCCATTATTTATTTGACTCTTCACCTCTCCTTGTCAATTTTTTCTATTA
CCCTCTTTTCTCCTCTTTTCTTTCGCGTTTGTCTTTTCTTTTTTTTATCT
TTCCATATAATTTTTTTTCTCTTCTTTTTTCTACCCCAATTTTTTTATTA
CTTCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_b21.b1 MSMg01no466_b21.b1 CHROMAT_FILE:
MSMg01no466_b21.b1 PHD_FILE: MSMg01no466_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:29 2005
         (456 letters)



>mm_chr2_29246204_29247059
          Length = 856

 Score =  866 bits (448), Expect = 0.0
 Identities = 454/456 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgcatgtggcaaagtgttcctctagtgaggatctgccatctttacagttttcttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgcatgtggcaaagtgttcctctagtgaggatctgccatctttacagttttcttaaa 260

                                                                       
Query: 61  cttcttatttcagatatgtttccagcttctagaaatgtccccagcagttcgtgcagagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 cttcttatttcagatatgtttccagcttctagaaatgtccccagcagtttgtgcagagct 320

                                                                       
Query: 121 ctgtggactccacccatgtcccctctcctcctgttgcttggtggtgttgctgtctgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtggactccacccatgtcccctctcctcctgttgcttggtggtgttgctgtctgagtt 380

                                                                       
Query: 181 aggatttctgctaagaaatgggatggtccataaccgctttttctttgatgctagagtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatttctgctaagaaatgggatggtccataaccgctttttctttgatgctagagtaca 440

                                                                       
Query: 241 acgttgctcttatcgctacctactgctcccaagcatgctgtctggaaaggccagaatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgttgctcttatcgctacctactgctcccaagcatgctgtctggaaaggccagaatttt 500

                                                                       
Query: 301 ctttccttctgtctcattcttgtttgggtttttctttcactttgctatgctggtaatcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttccttctgtctcattcttgtttgggtttttctttcactttgctatgctggtaatcag 560

                                                                       
Query: 361 atccagggccttgggcatgcaaggcaagtgagccaagccacaccctcagctcagctggtt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 atccagggccttgggcatgcaaggcaagtgagccaagccacaccctcagcccagctggtt 620

                                               
Query: 421 ccttttccagcacttgctcaggatccactcttgggc 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttttccagcacttgctcaggatccactcttgggc 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)