Query= MSMg01no466_c10.b1 MSMg01no466_c10.b1 CHROMAT_FILE:
MSMg01no466_c10.b1 PHD_FILE: MSMg01no466_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:32 2005
(545 letters)
>mm_chr2_143470235_143471178
Length = 944
Score = 948 bits (490), Expect = 0.0
Identities = 531/551 (96%), Gaps = 13/551 (2%)
Strand = Plus / Plus
Query: 1 tcaaaatggnccatgctgttgtgaaatgaatcatattattctgctccagcaataatgctt 60
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 197 tcaaaatgttccatgctgttgtgaaatgaatcatattaatctgctccagcaataatgctt 256
Query: 61 tgaaaaagattaaccattccattttaagtgccattgatattactcaggggctaaaaaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgaaaaagattaaccattccattttaagtgccattgatattactcaggggctaaaaaccc 316
Query: 121 ataaggagtgaac----aggctgtgttccatgagttctaaagtttgttgtgtctctgaca 176
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ataaggagtgaactaacaggctgtgttccatgagttctaaagtttgttgtgtctctgaca 376
Query: 177 tggcctgagcaatcagatctttgatgatttcagttcctgtagggtaaaattttgaatta- 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tggcctgagcaatcagatctttgatgatttcagttcctgtagggtaaaattttgaattag 436
Query: 236 ---tttttataaagcaaaatcttgctacattcaataccagaagagacaatcaacagatac 292
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagt----agaaagcaaaatcttgctacattcaataccagaagagacaatcaacagatac 492
Query: 293 taaattataggttgtctaatgctaaccagtttcccaccctaccctcacctaattttaatg 352
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaattataggttgtctaacgctaaccagtttcccaccctaccctcacctaattttaatg 552
Query: 353 atttgaagggctacctacctttcacatgcatctcatttagagaatggtaaaatttcttca 412
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 att-gaagggctacctacctttcacatgcatctcatttagagaatggtaaaatttcttca 611
Query: 413 tttattatgagtcctttttttccttcattagcagctgtcacctgtcctcccagctccgta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttattatgagtcctttttttccttcattagcagctgtcacctgtcctcccagctccgta 671
Query: 473 caacccccacagcccctccctcacctcctcctgagacactttcatcccaagaacccttta 532
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 672 caacccccacagcccctccctcacttcctcctgagacactttcatcccaagaacccttta 731
Query: 533 tgcagcttcac 543
|||||||||||
Sbjct: 732 tgcagcttcac 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space: 499690
Effective search space used: 499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no466_c10.g1 MSMg01no466_c10.g1 CHROMAT_FILE:
MSMg01no466_c10.g1 PHD_FILE: MSMg01no466_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:32 2005
(487 letters)
>mm_chr2_143575211_143576093
Length = 883
Score = 891 bits (461), Expect = 0.0
Identities = 480/487 (98%), Gaps = 4/487 (0%)
Strand = Plus / Minus
Query: 1 cttaaaccctcttctctagcttttgaaatacatagagagcactgccacggttggtcaccc 60
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 611 cttaaaccctcttctctagcttttgaaatacatagagaccactgccactgttggtcaccc 552
Query: 61 tactctgcagttcctcacctttcactatgatttagttcccactgagcaaactttccctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tactctgcagttcctcacctttcactatgatttagttcccactgagcaaactttccctat 492
Query: 121 gcaccaggtttgaaacaaagtatttttttttcttggagtaataaaaaacataagattctg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcaccaggtttgaaacaaagta-ttttttttcttggagtaataaaaaacataagattctg 433
Query: 181 aatactattcatgtgcagctaagcatgtaagcaagatatttacctaaagaaaaaaaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 432 aatactattcatgtgcagctaagcatgtaagcaagatatttacctaaagaaaaaaaa--a 375
Query: 241 ttaagtcacatttatatgtttagtagcaaaacaggatggaaaaagatgtagtctgtagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 -gaagtcacatttatatgtttagtagcaaaacaggatggaaaaagatgtagtctgtagtt 316
Query: 301 caagtctctgtcaatcacatgtctgttgagaggactaccaaggctgctatgatgttatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caagtctctgtcaatcacatgtctgttgagaggactaccaaggctgctatgatgttatag 256
Query: 361 cagaagtagttttaaagatatgtcaacacagacccactgggaattactggaaatgagctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cagaagtagttttaaagatatgtcaacacagacccactgggaattactggaaatgagctg 196
Query: 421 ggtgtggtggtgcatgcctttaatcttagcactagggaggcagaagaatggtagaatgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggtgtggtggtgcatgcctttaatcttagcactagggaggcagaagaatggtagaatgaa 136
Query: 481 tttgagg 487
|||||||
Sbjct: 135 tttgagg 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 883
Length adjustment: 10
Effective length of query: 477
Effective length of database: 873
Effective search space: 416421
Effective search space used: 416421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
