BAC Information

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BAC

Clone NameMSMg01-466J04
Chromosome2 (Build37)
Map Location 108,828,875 - 108,829,306
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031
Downstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466J04.T7 (MSMg01no466_j04.b1)MSMg01-466J04.TJ (MSMg01no466_j04.g1)
ACCAG550488AG550489
length7701,118
length of high quality
(start - end)
439 (46 - 484)---
definitionCHROMAT_FILE: MSMg01no466_j04.b1 PHD_FILE: MSMg01no466_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:06 2005CHROMAT_FILE: MSMg01no466_j04.g1 PHD_FILE: MSMg01no466_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCCCTGGTTTTCCTGATAACTGTCTACTCCTCATGCTCATTTTT
CTTTAGACAGAAATTCAGTTGATTCTTATGATAGGGAACAAGATTCTTTC
ATTTTAACTTTTGTTGATTACAGTTTTTGAGATATCAGCTGTGGCTTATA
ATATTGCATTGAACAAAAGGAAGTAGATTAAGAGGGCTCCACTTTCTCTC
ACCAAATGTAACTACCCTCATCCGGTTATTGAAGAGGTAGGTCAATGACT
CTAGTCAACCTTGTAAGGCTGTAAGCCTGTTAATGGTTAATCAACATGAT
GAAGAGTCTGGAATGACCATTTAGCAGTCTCAGTTTCTAGCTGAGTAGAA
ACATTTGAAGAAATCCCAGTAGAATAATTTCATCCTTTGTTACACATATT
TTATGCAGGTAGGGCCTAAAGTTAAATAAGGGAGAAAACAAATATTCTGC
AAGTAAGAGATATTCATAAGAACACGAACAGATGTTTCTGTTGTCTTTGC
CGTGTGAGACAGAAATATCTTAGTCCCTTGTTCTAACTACTTTAACTACT
TTTCTTCTGGCACGGCCTCCTCCTTCTCTGTATGGGTCCCCTTCCCCTTG
ACGCTCCTATTGTCCCGCCAGTCGTCCTTTTTTTCATTTTTTCCCCCAAT
TACTTCTTTTACCCATATTCCCCCCTGTTTCCCTCGCACTTCTGTTTTCA
CTCTTTTTTTTTTGTCTCCT
CCATCCCACTATTACCCTCTCTTCTTTCTCTCTCGCTTTCCCTCCGTCTC
TTAATTCCTCCTTTTTAACTTTTCTCCTCCTTCCCCTCCCCCTCCTTCTC
TCCACCTTATATCTTTCTCTCCCCAACCTAACCCTCACTTTTCTCTCTAA
ACTATAGACCCACCCATTCAACCCACAACTATAGCAATCACCAAGCGCAC
TCCCGGACTCCCTCTAAGATATATGATAAGAATTCACCATTCTATTATCT
CTCCATTTACTAATTACTCGCACTAAATAAATAATCAACAATATAATCTA
ATCCTAACATACCTCAATCCCATCATTAATACAATTATTACTATTAAAAG
TAAATAAATCACATATTCTTCTAATTTATCCAATCTCAATAATCTCTCAC
TACTATAAATCTATTGATCACACACACCTCTTCTCTCACTCATACCACAC
TCCTCCCCTTTTTTTCCCCAACTCCCCTTTACCACACCTAATCACAATAC
CAACCACACATATATCATCCCTATATCTCAATACCAATCTCATTAACCCC
AGACTGCCTCCCATCCACTCTCTCATTTCTATTATATATCTCATCACCAA
CTTCTCTCTCTCATAATATTCAATATCCCCTCCACATCCACTCACATCCA
CTCACATCATACACTCAACTATCTCCAACCATACTACATTACTCCTCCCA
TACACTATCATCTTAACACACCATATACCACCCAATCTAATACCTATAAT
ACCTCCCACACTATACTTATCAACATCACATCATAATGATACATATCTCC
CTACATACTTCCTATATATACACCTCATCACCTCTTCGCACCCACTATTA
TAATTCCCTCACCTTTCTTCTCTACTTTACCTATCTCTATCTTCACTCGC
GTCTGCTATACTTTCAGTATATGACAAATAATATCTACTAACTCCTATAT
ATCTCCATATAGTCTTCTCATTCATCATCTCCCGCCCTATACCTAACCGA
TCACCAACCACCTCTGCTCTATTCCTCTTATTATTATCCATCCTCCCATC
CCCTCTCTCTACAACATTAAATACTATACCTTCACACATACCCACTCAAG
CACACGCACACACACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_j04.b1 MSMg01no466_j04.b1 CHROMAT_FILE:
MSMg01no466_j04.b1 PHD_FILE: MSMg01no466_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:06 2005
         (439 letters)



>mm_chr2_108828668_108829506
          Length = 839

 Score =  806 bits (417), Expect = 0.0
 Identities = 429/433 (99%), Gaps = 2/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattccctggt-tttcctgataactgtctactcctcatgctcatttttctttagacaga 66
           |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaattccctggtattt-atgataactgtctactcctcatgctcatttttctttagacaga 581

                                                                       
Query: 67  aattcagttgattcttatgatagggaacaagattctttcattttaacttttgttgattac 126
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 580 aattcagttgattcttatgataggaaacaagattctttcattttaacttttgttgattac 521

                                                                       
Query: 127 agtttttgagatatcagctgtggcttataatattgcattgaacaaaaggaagtagattaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agtttttgagatatcagctgtggcttataatattgcattgaacaaaaggaagtagattaa 461

                                                                       
Query: 187 gagggctccactttctctcaccaaatgtaactaccctcatccggttattgaagaggtagg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gagggctccactttctctcaccaaatgtaactaccctcatccggttattgaagaggtagg 401

                                                                       
Query: 247 tcaatgactctagtcaaccttgtaaggctgtaagcctgttaatggttaatcaacatgatg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcaatgactctagtcaaccttgtaaggctgtaagcctgttaatggttaatcaacatgatg 341

                                                                       
Query: 307 aagagtctggaatgaccatttagcagtctcagtttctagctgagtagaaacatttgaaga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagagtctggaatgaccatttagcagtctcagtttctagctgagtagaaacatttgaaga 281

                                                                       
Query: 367 aatcccagtagaataatttcatcctttgttacacatattttatgcaggtagggcctaaag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aatcccagtagaataatttcatcctttgttacacatattttatgcaggtagggcctaaag 221

                        
Query: 427 ttaaataagggag 439
           |||||||||||||
Sbjct: 220 ttaaataagggag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)