BAC Information

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BAC

Clone NameMSMg01-466L16
Chromosome2 (Build37)
Map Location 128,973,277 - 128,973,516
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5
Downstream geneLOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466L16.T7 (MSMg01no466_l16.b1)MSMg01-466L16.TJ (MSMg01no466_l16.g1)
ACCAG550607AG550608
length769787
length of high quality
(start - end)
241 (77 - 317)387 (81 - 467)
definitionCHROMAT_FILE: MSMg01no466_l16.b1 PHD_FILE: MSMg01no466_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:19 2005CHROMAT_FILE: MSMg01no466_l16.g1 PHD_FILE: MSMg01no466_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTGTCTCATAATTTGCGGCCGCCTAAAGACTCACTAATACGAGACGAGC
GGCGGAANTCTTACATTTCAGCAACTAGGGGATCCTTTAAAAGGCCAGGT
ACACAAGATAAATCACACTACAGAGGACGGATATCCATACTTAGCATTCA
GATGTGTAGACACACATGTACATATGTGAACAAACACAGCCATCTGGTTT
TTGACAAAGACGCTAGATATACAGACTAGAGAAATGACATGCATCTTCAT
CATATGGCACTGGAAAAACTGGATGGTTCCGTGTAGAAAAATGGAACCAA
ATCACTATGCCTCACCTTGCTCTATTACCAACTCCAAATGGACCAACAAC
TTCAACATAAAATCTGAAACTCTGAAACTACTAGAAGACAGAGTCAGGGG
CAGCACGTTAGGACTGAGGTGAACGTAAAGAATTTCTGGCTAGGTCTCCT
TCCAGCTCACCCAGGAGATAAGGCCAGTATCTGGCAAACAGGACCTCATG
AAATGAAATAGCACGAAACCTTGTCCATTAAAGGAAAACCTTGTCAACTA
AAGGAACTTTGGTCATTAAAGGAAGAGGCAGCTTATTTAGATCGAAACAT
GTGGAAGCGCCTTTTGTGTTTTTTCTATGCGCTTTGTCCTTATTTTTTCT
TTTGCCCTTTTTCCTCTTTACATCCTCTATTTCATTTTCCTTCCTAAGAA
TTGTCTTCCCCTTTTTATGTCACTTTGCTATACCCACGTATTTTTCGCCT
ATTTTTTTTTTACCCCTTN
NTTCCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGACTACTGAAT
GGCTGAGAAGCACCTGAAAAAATTTTCAGCAACCTTAATCATCAGAGAAA
TGCAAATCAAAACAACCCTGAGATTTCATCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAAGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAGCACTCT
GGAAATCAGTCTGGTGGCTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAG
TAAGAAGGACACATGCTCCACTATGTTTATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGCACATTTAATCAATGGGATTACTACTCAGCTATTAAATAGA
ATAATTTTATTGAAAATTCCTAGGTTAATGGATTGGTCCTGGTAGGCCAT
CAACCCGGATTTAGTTGAACTCTCTGTGTCCGGGCTACATTCTTCCGATA
TATTACTTCTTTTTAATCATTAGTAATTTTACATCTACGATTATTTATTC
TTTCCCCCTCTCTCTAATATTTGCTAATGTAGCTTAATTCGATTTTTTAT
TTTTCTTATTTACTTACAATCCAACTACTTCGCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_l16.b1 MSMg01no466_l16.b1 CHROMAT_FILE:
MSMg01no466_l16.b1 PHD_FILE: MSMg01no466_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:19 2005
         (241 letters)



>mm_chr2_128973077_128973717
          Length = 641

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggatcctttaaaaggccaggtacacaagataaatcacactacagaggacggatatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggatcctttaaaaggccaggtacacaagataaatcacactacagaggacggatatcc 260

                                                                       
Query: 61  atacttagcattcagatgtgtagacacacatgtacatatgtgaacaaacacagccatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacttagcattcagatgtgtagacacacatgtacatatgtgaacaaacacagccatctg 320

                                                                       
Query: 121 gtttttgacaaagacgctagatatacagactagagaaatgacatgcatcttcatcatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 321 gtttttgacaaagacgctagatatacagactagagaaatgacatgcatcttcagcaaatg 380

                                                                       
Query: 181 gcactggaaaaactggatggttccgtgtagaaaaatggaaccaaatcactatgcctcacc 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gcactggaaaaactggatggttccatgtagaaaaatggaaccaaatcactatgcctcacc 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)