BAC Information

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BAC

Clone NameMSMg01-466M12
Chromosome2 (Build37)
Map Location 104,249,344 - 104,249,778
singlet/doubletsinglet
Overlap geneD430041D05Rik
Upstream geneElf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, LOC100043349
Downstream geneHipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M12.T7 (MSMg01no466_m12.b1)MSMg01-466M12.TJ (MSMg01no466_m12.g1)
ACCAG550647AG550648
length750790
length of high quality
(start - end)
435 (70 - 504)175 (130 - 304)
definitionCHROMAT_FILE: MSMg01no466_m12.b1 PHD_FILE: MSMg01no466_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:24 2005CHROMAT_FILE: MSMg01no466_m12.g1 PHD_FILE: MSMg01no466_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCCTTTTATATTTGCGGCCGAAAAAGAACCCTATTTCAATAGGACN
CGCGGAATCCCCTTATCACAGAAGCTTGCCCTTCACGGGAGTCATAGCAA
TCATTCTTATTTCAAAGACCATGGCTGGCCACGCAGTGTAAGTTTCAAAG
CACTTCTGCAGAATAATTCTGCCCAAATAGTTACAACAGATCCACAAAAT
CGTCCGCGGAAGTACAGAAATCTGTTTCTGAAGGATCGTTGGTGGTCTGA
GCACCAAGAGTGACTCTTCTTCAACGAGCCTCTTGTAAAAAATAGGTATA
CATTTGATCAATGCCTGATTCTTTTGCAAAATGCAATCAATTATTTTAAG
TACCTCATTCCCAAAAGGAAGGGAGGGGAACCTATTATGAGCAACGGGGG
AACGCTATTTTGACACAGAAATTGCTTCAAACTCTCAGGTCATTCCTTGC
ACTTAAGACAAAGTGAATACTAGCAACTGGAAGCCCAAAACATCCACAGC
ATCCCACTGAACAGGTCTCTTTTATGCTATCCTAACTACGCCATGTCTAG
CTAAAGGAAACGTGTTTTGTGGAATCACCAAGCAAGTATTTACCACTTTG
TCCAGGTATTGATAAATTTAAGATACATACGTTGCCTTTTTTTTTCCCCC
GCCACCATGTCTTTTTCTAAAAAAAGATTTCCCTCTAATTCCCTCTTTCT
TCATTATTTGTCTATATTCATAATAAAAACCCTGCTCCCTCCTTTATTAN

NAAAGTCACTATGCAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTATGTCAAAAAGAATTCCAGGNCACCACCCAGAGCT
ACAAAGTGAGACTGTCTCATTTAAACCCAATACTAAGGTGTGAACCTGGT
ATGGNATTGCATACCTTTAATATAAGTACTATAAAGGCAGTGGCAGGTGC
ATCTCTGCAGTCTGCTGGGGCTACAAAGTTAGACCCTGTCTTAGAAAGCT
TATTCAAGAAAATCAGGAGTTTCTGGGCAACATCAGCTACATAGCCAGAC
CATGGCAAAAAGNNTATTANATATTTGTATTATTCAAGCATGGTGGTTCA
TGCCTATAACATTACTTACCACACTGAGTGAGGCAGAACTGCTCTGAGAT
TGTGACTATCCTATATTACACAGCTCATTCTATGGCAATCCATGGTTACA
GAGTAAGACCCTGTCTCATCATCAAGACTAATTGCTTGACTAGTGTGTTT
TGATATCCTGTTCTCTTATCTCTACACTAAGTAATATCATCATCTTTATT
GCCCACTTTTTCCCAATAAAGCTTTTTCCCTTTTTTCTTTCTTTATTTTC
CGTTTTTCCTTATATATTTTTTTCTTCTCCTCTTTTGGTTTTCCCCTATT
TTCTTTTTTTGTGTTTNTCNTGCTCTTCGTAAATCTCTCAATGAATCTTC
TCCTTTTCTCTTTTGGTGTTTNTTTTAACTCCTATTATTTTTCTCTCTTT
CTTTCTTTCCTCTTCAACTCCATTATCCGTGTCTTTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m12.b1 MSMg01no466_m12.b1 CHROMAT_FILE:
MSMg01no466_m12.b1 PHD_FILE: MSMg01no466_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:24 2005
         (435 letters)



>mm_chr2_104249144_104249978
          Length = 835

 Score =  795 bits (411), Expect = 0.0
 Identities = 429/435 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagcttgcccttcacgggagtcatagcaatcattcttatttcaaagaccatggctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagcttgcccttcacgggagtcatagcaatcattcttatttcaaagaccatggctggc 260

                                                                       
Query: 61  cacgcagtgtaagtttcaaagcacttctgcagaataattctgcccaaatagttacaacag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcgcagtgtaagtttcaaagcacttctgcagaataattctgcccaaatagttacaacag 320

                                                                       
Query: 121 atccacaaaatcgtccgcggaagtacagaaatctgtttctgaaggatcgttggtggtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccacaaaatcgtccgcggaagtacagaaatctgtttctgaaggatcgttggtggtctg 380

                                                                       
Query: 181 agcaccaagagtgactcttcttcaacgagcctcttgtaaaaaataggtatacatttgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaccaagagtgactcttcttcaacgagcctcttgtaaaaaataggtatacatttgatc 440

                                                                       
Query: 241 aatgcctgattcttttgcaaaatgcaatcaattattttaagtacctcattcccaaaagga 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgcctgaaccttttgcaaaatgcaatcaattattttaagtacctcattcccaaaagga 500

                                                                       
Query: 301 agggaggggaacctattatgagcaacgggggaacgctattttgacacagaaattgcttca 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggaggggaacctgttatgagcaacgggggaacgctattttgacacagaaattgcttca 560

                                                                       
Query: 361 aactctcaggtcattccttgcacttaagacaaagtgaatactagcaactggaagcccaaa 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 aactctcaggtcattccttgcacttaagacaaagtgaatactagcaacgggaagcccaaa 620

                          
Query: 421 acatccacagcatcc 435
           ||||||||| |||||
Sbjct: 621 acatccacaacatcc 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)